CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIBMGA006208
(
Bombyx mori
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIBMGA006208
T54991_0.6
SilkDB (2008-Apr-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIBMGA006208
RRM
162
230
VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPI
BGIBMGA006208
RRM
260
330
LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHASDAKKAMEQLNGFELAGRPMK
Links
Other
RRM
family RBPs
Other
Bombyx mori
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH73374
Xenopus laevis
AAH73374
N
0.721
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
0.743
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.771
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.736
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
0.743
LOC100052786
Equus caballus
ENSECAG00000009910
N
0.743
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
0.743
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.736
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.716
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.779
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.743
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.743
RBM23
Sorex araneus
ENSSARG00000005165
N
0.736
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.779
RBM23
Tursiops truncatus
ENSTTRG00000001500
N
0.743
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.750
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.723
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.729
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.729
RBM23
Homo sapiens
ENSG00000100461
N
0.743
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.743
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
0.743
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.736
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.743
RBM23
Canis familiaris
ENSCAFG00000011217
N
0.743
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.714
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.750
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.764
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.771
RBM39
Homo sapiens
ENSG00000131051
N
0.771
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.771
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.771