CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH73374
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH73374
T59533_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH73374
RRM
155
223
VFCMQLAARIRSRDLEDFFSAVGKVRDVKIISDRNSRRSKGIAYVEFCEIHSVPLAIGLTGQRLLGVPI
AAH73374
RRM
252
322
LYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQLNGFELAGKPMK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.964
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.914
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.907
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
0.900
RBM23
Homo sapiens
ENSG00000100461
N
0.900
RBM23
Tursiops truncatus
ENSTTRG00000001500
N
0.900
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
0.900
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
0.900
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
0.900
RBM23
Canis familiaris
ENSCAFG00000011217
N
0.900
LOC100052786
Equus caballus
ENSECAG00000009910
N
0.900
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.893
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.893
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.893
RBM23
Sorex araneus
ENSSARG00000005165
N
0.893
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.893
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.886
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.879
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.879
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.871
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.871
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.871
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.871
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.865
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.858
RBM39
Homo sapiens
ENSG00000131051
N
0.829
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.829
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.829
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.829
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.829
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.821
RBM23
Spermophilus tridecemlineatus
ENSSTOG00000010354
N
0.779
RBM23
Felis catus
ENSFCAG00000006632
N
0.750
RBM23
Tarsius syrichta
ENSTSYG00000014755
N
0.750
RBM23
Choloepus hoffmanni
ENSCHOG00000004460
N
0.736
RBM23
Vicugna pacos
ENSVPAG00000000599
N
0.729
BGIBMGA006208
Bombyx mori
BGIBMGA006208
N
0.721
RBM23
Dasypus novemcinctus
ENSDNOG00000002569
N
0.714
RBM23
Macropus eugenii
ENSMEUG00000014548
N
0.707