CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM23
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000001500
T42536_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000001416
RRM
167
235
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI
ENSTTRP00000001416
RRM
264
334
LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100052786
Equus caballus
ENSECAG00000009910
N
1.000
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
1.000
RBM23
Canis familiaris
ENSCAFG00000011217
N
1.000
RBM23
Homo sapiens
ENSG00000100461
N
1.000
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
1.000
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
1.000
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
1.000
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.993
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.993
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.993
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.993
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.986
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.979
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.979
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.971
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.971
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.965
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.964
RBM23
Sorex araneus
ENSSARG00000005165
N
0.957
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.943
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.936
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.921
AAH73374
Xenopus laevis
AAH73374
N
0.900
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.879
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.879
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.879
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.879
RBM39
Homo sapiens
ENSG00000131051
N
0.879
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.879
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.879
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.871
RBM23
Spermophilus tridecemlineatus
ENSSTOG00000010354
N
0.836
RBM23
Tarsius syrichta
ENSTSYG00000014755
N
0.821
RBM23
Felis catus
ENSFCAG00000006632
N
0.821
RBM23
Choloepus hoffmanni
ENSCHOG00000004460
N
0.807
RBM23
Vicugna pacos
ENSVPAG00000000599
N
0.800
RBM23
Dasypus novemcinctus
ENSDNOG00000002569
N
0.786
RBM23
Macropus eugenii
ENSMEUG00000014548
N
0.750
BGIBMGA006208
Bombyx mori
BGIBMGA006208
N
0.743