chr4.CM0165.550.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr4.CM0165.550.nd T55877_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0165.550.nd RRM 138 208

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29634.m002163 Ricinus communis 29634.m002163 N 0.887
A9PI24_POPTR Populus trichocarpa POPTR_0005s12580 I 0.831
B9HEV8_POPTR Populus trichocarpa POPTR_0007s12690 I 0.873
BGIOSIBCE031073 Oryza indica BGIOSIBCE031073 N 0.702
BRADI3G21360 Brachypodium distachyon BRADI3G21360 N 0.831
BRADI3G30430 Brachypodium distachyon BRADI3G30430 N 0.761
Cucsa.127380 Cucumis sativus Cucsa.127380 I 0.859
Glyma01g38120.1 Glycine max Glyma01g38120.1 N 0.944
Glyma11g07200.1 Glycine max Glyma11g07200.1 N 0.944
GRMZM2G113592 Zea mays GRMZM2G113592 N 0.803
GSVIVG00018981001 Vitis vinifera GSVIVG00018981001 N 0.859
IGS.gm_29_00073 Chlorella NC64A IGS.gm_29_00073 I 0.704
LOC_Os10g02630 Oryza sativa LOC_Os10g02630 N 0.831
MDP0000261705 Malus x domestica MDP0000261705 N 0.803
MDP0000744216 Malus x domestica MDP0000744216 N 0.859
Medtr8g093540 Medicago truncatula Medtr8g093540 N 0.944
mgf003371m Mimulus guttatus mgf003371m N 0.726
ppa004309m Prunus persica ppa004309m N 0.831
SB01G026920 Sorghum bicolor Sb01g026920 N 0.775
SB01G039540 Sorghum bicolor Sb01g039540 N 0.803
U1-70K Arabidopsis thaliana AT3G50670-TAIR-G N 0.817
XM_002877713.1 Arabidopsis lyrata fgenesh2_kg.5__1406__AT3G50670.1 N 0.817