CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zrsr2
(
Rattus norvegicus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSRNOG00000033176
T00616_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000049816
CCCH ZF
167
193
KDRANCPFYSKTGACRFGDRCSRKHNF
ENSRNOP00000049816
RRM
242
298
DVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQ
ENSRNOP00000049816
CCCH ZF
307
332
WKMAICGLFEVQQCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Rattus norvegicus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.000
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.000
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.000
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.000
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.000
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.000
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.000
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.000
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.000
PK16312.1
Cannabis sativa
PK16312.1
I
0.000
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.000
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.000
rbm42
Danio rerio
ENSDARG00000039910
I
0.000
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.000
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.000
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.000
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.000
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.000
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.000
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.000
76581
Helobdella robusta
76581
I
0.000
RBM42
Homo sapiens
ENSG00000126254
D
0.000
chr5.LjT18P14.100.nd
Lotus japonicus
chr5.LjT18P14.100.nd
N
0.000
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.000
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.000
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.000
MDP0000320908
Malus x domestica
MDP0000320908
I
0.000
MDP0000283678
Malus x domestica
MDP0000283678
I
0.000
cassava22670.valid.m1
Manihot esculenta
cassava22670.valid.m1
N
0.000
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.000
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.000
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.000
mgf021739m
Mimulus guttatus
mgf021739m
I
0.000
mgf018525m
Mimulus guttatus
mgf018525m
I
0.000
mgf008981m
Mimulus guttatus
mgf008981m
I
0.000
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.000
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.000
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.000
NCLIV_021850
Neospora caninum
NCLIV_021850
N
0.000
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.000
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.000
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.000
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.000
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.000
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.000
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.000
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.000
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.000
GSPATP00035306001
Paramecium tetraurelia
GSPATP00035306001
N
0.000
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.000
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.000
PDK_20s1329112g001
Phoenix dactylifera
PDK_20s1329112g001
N
0.000
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.000
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.000
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.000
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.000
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.000
ppa010477m
Prunus persica
ppa010477m
I
0.000
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.000
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.000
29680.m001693
Ricinus communis
29680.m001693
I
0.000
gw1.0.1780.1
Selaginella moellendorfii
gw1.0.1780.1
I
0.000
RBM42
Sorex araneus
ENSSARG00000010724
I
0.000
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.000
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.000
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.000
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.000
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.000
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.000
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.000
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.000
TGVEG_046310
Toxoplasma gondii
TGVEG_046310
N
0.000
TGME49_003080
Toxoplasma gondii
TGME49_003080
N
0.000
TGGT1_017860
Toxoplasma gondii
TGGT1_017860
N
0.000
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.000
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.000
A2VDB3
Xenopus laevis
A2VDB3
I
0.000
AAI29698
Xenopus laevis
AAI29698
I
0.000
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.000
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.000
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.000