CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Unk
(
Mus musculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMUSG00000020770
T02986_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000021116
CCCH ZF
90
112
CTKYDEATGLCPEGDECPFLHRT
ENSMUSP00000021116
CCCH ZF
294
320
YKSTKCNDMQQAGSCPRGPFCAFAHIE
ENSMUSP00000102060
CCCH ZF
90
112
CTKYDEATGLCPEGDECPFLHRT
ENSMUSP00000102060
CCCH ZF
294
320
YKSTKCNDMQQAGSCPRGPFCAFAHIE
Links
Other
CCCH ZF
family RBPs
Other
Mus musculus
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP001645
Anopheles gambiae
AGAP001645
N
0.000
GF19034
Drosophila ananassae
FBgn0096046
N
0.000
GG17948
Drosophila erecta
FBgn0110168
N
0.000
GH12560
Drosophila grimshawi
FBgn0120039
N
0.000
caz
Drosophila melanogaster
FBgn0011571
N
0.000
GI11213
Drosophila mojavensis
FBgn0133974
N
0.000
GL21338
Drosophila persimilis
FBgn0158931
N
0.000
GA22827-RA
Drosophila pseudoobscura
FBgn0244229
N
0.000
GD17272
Drosophila simulans
FBgn0188834
N
0.000
GK25719
Drosophila willistoni
FBgn0227678
N
0.000