CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R004849
(
Ailuropoda melanoleuca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Ame_R004849
T05948_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R004849
CCCH ZF
414
440
YKTYMCRDMKQRGGCPRGASCTFAHSQ
Links
Other
CCCH ZF
family RBPs
Other
Ailuropoda melanoleuca
RBPs
93 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s15238g5t4
Acyrtosiphon pisum
DGIL_AUG5s15238g5t4
N
0.000
AAEL011420
Aedes aegypti
AAEL011420
N
0.000
AGAP011722
Anopheles gambiae
AGAP011722
N
0.000
amel4_ncbi_hmm14071
Apis mellifera
amel4_ncbi_hmm14071
N
0.000
BGIBMGA004353
Bombyx mori
BGIBMGA004353
N
0.000
estExt_Genewise1Plus.C_1030025
Daphnia pulex
estExt_Genewise1Plus.C_1030025
N
0.000
GH22967
Drosophila grimshawi
FBgn0130424
N
0.000
GI18454
Drosophila mojavensis
FBgn0141193
N
0.000
GL11864
Drosophila persimilis
FBgn0149472
N
0.000
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.000
GJ21539
Drosophila virilis
FBgn0208659
N
0.000
GK17961
Drosophila willistoni
FBgn0219960
N
0.000
nasonia_NCBI_hmm386924
Nasonia vitripennis
nasonia_NCBI_hmm386924
N
0.000