CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_12045
(
Puccinia graminis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PGTG_12045
T08188_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_12045
CCHC ZF
197
214
GQCFRCGNQGHILRDCPD
Links
Other
CCHC ZF
family RBPs
Other
Puccinia graminis
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R017927
Ailuropoda melanoleuca
Ame_R017927
I
0.000
PABPC5
Bos taurus
ENSBTAG00000019942
I
0.000
Q95M35_CALJA
Callithrix jacchus
ENSCJAG00000003665
I
0.000
PABPC5
Cavia porcellus
ENSCPOG00000002555
I
0.000
Pabpc5
Dipodomys ordii
ENSDORG00000001035
I
0.000
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.000
PABPC5
Gorilla gorilla
ENSGGOG00000007622
I
0.000
PABPC5
Homo sapiens
ENSG00000174740
D
0.000
PABP5_MACMU
Macaca mulatta
ENSMMUG00000011562
I
0.000
PABPC5
Microcebus murinus
ENSMICG00000009733
I
0.000
Pabpc5
Mus musculus
ENSMUSG00000034732
I
0.000
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.000
PABPC5
Oryctolagus cuniculus
ENSOCUG00000010919
I
0.000
PABPC5
Otolemur garnettii
ENSOGAG00000006882
I
0.000
PABP5_PANTR
Pan troglodytes
ENSPTRG00000022078
I
0.000
ENSPPYG00000020526
Pongo pygmaeus
ENSPPYG00000020526
I
0.000
PABPC5
Pteropus vampyrus
ENSPVAG00000006465
I
0.000
LOC100360473
Rattus norvegicus
ENSRNOG00000003354
I
0.000
PABPC5
Sorex araneus
ENSSARG00000014012
I
0.000
PABPC5
Tupaia belangeri
ENSTBEG00000016482
I
0.000
PABPC5
Vicugna pacos
ENSVPAG00000001063
I
0.000
AAH73435
Xenopus laevis
AAH73435
I
0.000