CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os02g18520
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g18520
T10894_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g18520.1
CCHC ZF
408
425
RPCFNCGKHGHFAGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
390 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002864508.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001450
N
0.000
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.000
ECT10
Arabidopsis thaliana
AT5G58190-TAIR-G
N
0.000
PK05579.1
Cannabis sativa
PK05579.1
N
0.000
Cucsa.356240
Cucumis sativus
Cucsa.356240
N
0.000
LjT10H22.120.nd
Lotus japonicus
LjT10H22.120.nd
N
0.000
LjSGA_011466.1
Lotus japonicus
LjSGA_011466.1
N
0.000
MDP0000199885
Malus x domestica
MDP0000199885
N
0.000
MDP0000189157
Malus x domestica
MDP0000189157
N
0.000
cassava16277.m1
Manihot esculenta
cassava16277.m1
N
0.000
mgf019821m
Mimulus guttatus
mgf019821m
N
0.000
PDK_20s1906441g001
Phoenix dactylifera
PDK_20s1906441g001
N
0.000
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.000
B9N817_POPTR
Populus trichocarpa
POPTR_0018s14670
N
0.000
B9HBC4_POPTR
Populus trichocarpa
POPTR_0006s07970
N
0.000
ppa002677m
Prunus persica
ppa002677m
N
0.000
29890.m000285
Ricinus communis
29890.m000285
N
0.000