CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
MEX3A
(
Ochotona princeps
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSOPRG00000002937
T19244_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.818
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000002699
KH
70
130
TECVPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREI
ENSOPRP00000002699
KH
162
221
TIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERAREEI
Links
Other
KH
family RBPs
Other
Ochotona princeps
RBPs
149 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_80350
Agaricus bisporus
estExt_Genewise1Plus.C_80350
I
0.000
Ame_R013633
Ailuropoda melanoleuca
Ame_R013633
I
0.000
AMAG_01618
Allomyces macrogynus
AMAG_01618
I
0.000
AMAG_04113
Allomyces macrogynus
AMAG_04113
I
0.000
EIF2S1
Anolis carolinensis
ENSACAG00000005994
I
0.000
69770
Aureococcus anophagefferens
69770
I
0.000
72304
Aureococcus anophagefferens
72304
I
0.000
EDO07273.1
Babesia bovis
EDO07273.1
N
0.000
fgenesh1_pm.C_scaffold_10000060
Batrachochytrium dendrobatidis
fgenesh1_pm.C_scaffold_10000060
I
0.000
IF2A_BOVIN
Bos taurus
ENSBTAG00000016311
I
0.000
estExt_fgenesh2_pm.C_1660010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1660010
I
0.000
estExt_fgenesh2_pm.C_5760005
Branchiostoma floridae
estExt_fgenesh2_pm.C_5760005
I
0.000
Bm1_04900
Brugia malayi
Bm1_04900
I
0.000
LOC100399114
Callithrix jacchus
ENSCJAG00000015368
I
0.000
EIF2S1
Canis familiaris
ENSCAFG00000016386
I
0.000
CAOG_02542
Capsaspora owczarzaki
CAOG_02542
I
0.000
EIF2S1
Cavia porcellus
ENSCPOG00000003313
I
0.000
e_gwW.11.341.1
Chlamydomonas reinhardtii
e_gwW.11.341.1
I
0.000
IGS.gm_12_00191
Chlorella NC64A
IGS.gm_12_00191
I
0.000
CC1G_08524
Coprinopsis cinerea
CC1G_08524
I
0.000
Chro.70587
Cryptosporidium hominis
Chro.70587
I
0.000
CMU_019420
Cryptosporidium muris
CMU_019420
N
0.000
cgd7_5270
Cryptosporidium parvum
cgd7_5270
I
0.000
eif2s1
Danio rerio
ENSDARG00000052178
I
0.000
eif2s1l
Danio rerio
ENSDARG00000005827
I
0.000
Eif2s1
Dipodomys ordii
ENSDORG00000002382
I
0.000
EIF2S1
Echinops telfairi
ENSETEG00000019003
I
0.000
LOC100052709
Equus caballus
ENSECAG00000018424
I
0.000
EIF2S1
Erinaceus europaeus
ENSEEUG00000010225
I
0.000
IF2A_CHICK
Gallus gallus
ENSGALG00000009565
I
0.000
EIF2S1
Gasterosteus aculeatus
ENSGACG00000008569
I
0.000
EIF2S1
Gorilla gorilla
ENSGGOG00000001603
I
0.000
114622
Helobdella robusta
114622
I
0.000
estExt_fgenesh2_pm.C_120283
Heterobasidion annosum
estExt_fgenesh2_pm.C_120283
I
0.000
EIF2S1
Homo sapiens
ENSG00000134001
I
0.000
XP_002156465.1
Hydra magnipapillata
XP_002156465.1
I
0.000
ISCW017360
Ixodes scapularis
ISCW017360
I
0.000
e_gwh1.12.106.1
Laccaria bicolor
e_gwh1.12.106.1
I
0.000
LOAG_09556
Loa loa
LOAG_09556
I
0.000
estExt_fgenesh2_pm.C_sca_10068
Lottia gigantea
estExt_fgenesh2_pm.C_sca_10068
I
0.000
EIF2S1
Loxodonta africana
ENSLAFG00000013423
I
0.000
EIF2S1
Macaca mulatta
ENSMMUG00000021419
I
0.000
cassava7659.valid.m1
Manihot esculenta
cassava7659.valid.m1
I
0.000
cassava7658.valid.m1
Manihot esculenta
cassava7658.valid.m1
I
0.000
Medtr3g094720
Medicago truncatula
Medtr3g094720
I
0.000
fgenesh1_pg.C_scaffold_2000543
Melampsora laricis populina
fgenesh1_pg.C_scaffold_2000543
I
0.000
EIF2S1
Meleagris gallopavo
ENSMGAG00000011974
I
0.000
Minc01303
Meloidogyne incognita
Minc01303
I
0.000
EIF2S1
Microcebus murinus
ENSMICG00000010793
I
0.000
EIF2S1
Monodelphis domestica
ENSMODG00000009911
I
0.000
estExt_fgenesh2_pg.C_150109
Monosiga brevicollis
estExt_fgenesh2_pg.C_150109
I
0.000
estExt_Genewise1.C_51162
Mucor circinelloides
estExt_Genewise1.C_51162
I
0.000
Eif2s1
Mus musculus
ENSMUSG00000021116
I
0.000
estExt_GenewiseH_1.C_750056
Nematostella vectensis
estExt_GenewiseH_1.C_750056
I
0.000
e_gw.114.57.1
Nematostella vectensis
e_gw.114.57.1
I
0.000
NCLIV_056550
Neospora caninum
NCLIV_056550
I
0.000
EIF2S1
Ochotona princeps
ENSOPRG00000004520
I
0.000
EIF2S1
Ornithorhynchus anatinus
ENSOANG00000005409
I
0.000
IF2A_RABIT
Oryctolagus cuniculus
ENSOCUG00000012023
I
0.000
EIF2S1
Oryzias latipes
ENSORLG00000011844
I
0.000
EIF2S1
Pan troglodytes
ENSPTRG00000006462
I
0.000
e_gww2.12.213.1
Phanerochaete chrysosporium
e_gww2.12.213.1
I
0.000
estExt_Genewise1Plus.C_230113
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_230113
I
0.000
PITG_07885
Phytophthora infestans
PITG_07885
I
0.000
fgenesh1_pm.C_scaffold_69000005
Phytophthora ramorum
fgenesh1_pm.C_scaffold_69000005
I
0.000
PBANKA_021210
Plasmodium berghei
PBANKA_021210
N
0.000
PCHAS_021050
Plasmodium chabaudi
PCHAS_021050
N
0.000
PF07_0117
Plasmodium falciparum
PF07_0117
N
0.000
PVX_081705
Plasmodium vivax
PVX_081705
N
0.000
PY00093
Plasmodium yoelii
PY00093
N
0.000
genemark.2222_g
Pleurotus ostreatus
genemark.2222_g
I
0.000
PredSwiss_EST393.1
Pneumocystis carinii
PredSwiss_EST393.1
I
0.000
ENSPPYG00000005921
Pongo pygmaeus
ENSPPYG00000005921
I
0.000
estExt_Genewise1.C_100122
Postia placenta
estExt_Genewise1.C_100122
I
0.000
EIF2S1
Procavia capensis
ENSPCAG00000002613
I
0.000
Eif2s1
Rattus norvegicus
ENSRNOG00000009432
I
0.000
RO3G_13185
Rhizopus oryzae
RO3G_13185
I
0.000
RO3G_12494
Rhizopus oryzae
RO3G_12494
I
0.000
estExt_Genewise1.C_30452
Schizophyllum commune
estExt_Genewise1.C_30452
I
0.000
estExt_fgenesh1_pm.C_210071
Selaginella moellendorfii
estExt_fgenesh1_pm.C_210071
I
0.000
estExt_fgenesh2_kg.C_21286
Serpula lacrymans
estExt_fgenesh2_kg.C_21286
I
0.000
EIF2S1
Sorex araneus
ENSSARG00000011682
I
0.000
EIF2S1
Spermophilus tridecemlineatus
ENSSTOG00000001565
I
0.000
SPPG_00622
Spizellomyces punctatus
SPPG_00622
I
0.000
estExt_fgenesh1_kg.C_130002
Sporobolomyces roseus
estExt_fgenesh1_kg.C_130002
I
0.000
XP_801812.1
Strongylocentrotus purpuratus
XP_801812.1
I
0.000
XP_001176396.1
Strongylocentrotus purpuratus
XP_001176396.1
I
0.000
XP_001176254.1
Strongylocentrotus purpuratus
XP_001176254.1
I
0.000
XP_779939.1
Strongylocentrotus purpuratus
XP_779939.1
I
0.000
EIF2S1
Sus scrofa
ENSSSCG00000002289
I
0.000
EIF2S1
Taeniopygia guttata
ENSTGUG00000011542
I
0.000
EIF2S1
Takifugu rubripes
ENSTRUG00000017958
I
0.000
EIF2S1
Tetraodon nigroviridis
ENSTNIG00000012223
I
0.000
THAPSDRAFT_105
Thalassiosira pseudonana
Thaps105
I
0.000
TA06015
Theileria annulata
TA06015
N
0.000
TP01_0853
Theileria parva
TP01_0853
N
0.000
TGME49_113230
Toxoplasma gondii
TGME49_113230
I
0.000
TGGT1_089620
Toxoplasma gondii
TGGT1_089620
I
0.000
TGVEG_097260
Toxoplasma gondii
TGVEG_097260
I
0.000
e_gw1.18.114.1
Tremella mesenterica
e_gw1.18.114.1
I
0.000
e_gw1.7.228.1
Trichoplax adhaerens
e_gw1.7.228.1
I
0.000
EIF2S1
Tursiops truncatus
ENSTTRG00000015806
I
0.000
estExt_fgenesh4_pg.C_220183
Volvox carteri
estExt_fgenesh4_pg.C_220183
I
0.000
WUBG_12485
Wuchereria bancrofti
WUBG_12485
I
0.000
AAH46576
Xenopus laevis
AAH46576
I
0.000
Q7ZTK4
Xenopus laevis
Q7ZTK4
I
0.000