AMAG_04113 (Allomyces macrogynus)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 AMAG_04113 T59817_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AMAG_04113T0 S1 17 91

Links

Other S1 family RBPs
Other Allomyces macrogynus RBPs

257 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_01618 Allomyces macrogynus AMAG_01618 I 1.000
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.907
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.895
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.868
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.868
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.868
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.868
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.867
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.855
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.855
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.853
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.853
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.853
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.853
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.853
PITG_07885 Phytophthora infestans PITG_07885 I 0.853
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.842
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.842
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.842
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.840
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.840
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.840
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.829
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.829
ISCW017360 Ixodes scapularis ISCW017360 I 0.829
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.829
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.829
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.829
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.829
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.829
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.829
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.829
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.829
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.829
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.829
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.829
CTRG_04191 Candida tropicalis CTRG_04191 I 0.829
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.827
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.827
72304 Aureococcus anophagefferens 72304 I 0.827
69770 Aureococcus anophagefferens 69770 I 0.827
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.827
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.816
SUI2 Saccharomyces cerevisiae YJR007W I 0.816
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.816
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.816
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.816
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.816
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.816
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.816
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.816
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.816
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.816
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.816
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.816
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.816
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.816
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.816
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.816
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.816
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.816
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.816
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.816
SUI2 Candida albicans orf19.6213 I 0.816
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.816
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.816
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.816
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.816
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.816
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.816
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.816
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.816
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.816
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.816
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.813
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.813
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.813
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.813
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.813
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.813
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.813
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.813
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.813
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.813
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.813
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.813
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.813
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.813
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.813
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.813
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.813
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.813
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.813
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.813
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.813
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.813
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.813
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.813
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.813
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.813
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.813
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.813
MCYG_00123 Microsporum canis MCYG_00123 I 0.813
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.813
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.813
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.813
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.813
TERG_00559 Trichophyton rubrum TERG_00559 I 0.813
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.813
AAH46576 Xenopus laevis AAH46576 I 0.813
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.813
EIF2S1 Homo sapiens ENSG00000134001 I 0.813
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.813
eif2s1 Danio rerio ENSDARG00000052178 I 0.813
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.813
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.813
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.813
LOC100052709 Equus caballus ENSECAG00000018424 I 0.813
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.813
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.813
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.813
eif2s1l Danio rerio ENSDARG00000005827 I 0.813
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.813
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.803
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.803
EDP42051.1 Malassezia globosa EDP42051.1 I 0.803
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.803
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.803
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.803
UM01463 Ustilago maydis UM01463 I 0.803
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.803
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.803
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.803
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.803
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.803
AB05699.1 Alternaria brassicicola AB05699.1 I 0.803
AGR320W Ashbya gossypii AGR320W I 0.803
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.803
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.803
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.803
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.803
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.803
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.803
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.803
PHUM551010 Pediculus humanus PHUM551010 I 0.803
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.803
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.803
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.803
NCU08277 Neurospora crassa NCU08277 I 0.803
Bm1_04900 Brugia malayi Bm1_04900 I 0.800
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.800
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.800
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.800
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.800
LOAG_09556 Loa loa LOAG_09556 I 0.800
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.800
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.800
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.800
114622 Helobdella robusta 114622 I 0.800
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.800
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.800
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.795
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.789
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.789
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.789
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.787
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.787
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.787
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.787
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.787
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.787
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.787
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.787
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.787
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.785
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.776
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.776
GI21763 Drosophila mojavensis FBgn0144493 I 0.776
GL20268 Drosophila persimilis FBgn0157863 I 0.776
GE15968 Drosophila yakuba FBgn0233524 I 0.776
GD15749 Drosophila simulans FBgn0187410 I 0.776
GJ19141 Drosophila virilis FBgn0206286 I 0.776
GK25248 Drosophila willistoni FBgn0227207 I 0.776
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.776
GG19321 Drosophila erecta FBgn0111525 I 0.776
AGAP011190 Anopheles gambiae AGAP011190 I 0.776
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.776
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.776
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.776
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.776
GM13399 Drosophila sechellia FBgn0168330 I 0.776
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.776
GF19374 Drosophila ananassae FBgn0096384 I 0.776
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.773
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.773
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.766
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.763
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.763
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.763
PGTG_13830 Puccinia graminis PGTG_13830 N 0.760
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.760
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.750
AAEL013675 Aedes aegypti AAEL013675 I 0.750
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.750
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.747
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.747
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.737
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.737
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.733
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.733
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.733
SB01G038230 Sorghum bicolor Sb01g038230 I 0.733
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.733
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.733
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.724
MDP0000663428 Malus x domestica MDP0000663428 I 0.724
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.724
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.724
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.724
ppa008120m Prunus persica ppa008120m I 0.724
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.724
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.724
29607.m000238 Ricinus communis 29607.m000238 I 0.724
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.724
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.724
PK10564.1 Cannabis sativa PK10564.1 I 0.724
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.724
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.724
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.724
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.724
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.724
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.720
CBG22041 Caenorhabditis briggsae CBG22041 I 0.720
MDP0000155133 Malus x domestica MDP0000155133 I 0.720
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.720
CBN03344 Caenorhabditis brenneri CBN03344 I 0.720
CBN09310 Caenorhabditis brenneri CBN09310 I 0.720
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.720
CRE03750 Caenorhabditis remanei CRE03750 I 0.720
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.720
cgd7_5270 Cryptosporidium parvum cgd7_5270 I 0.720
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.720
PKH_021240 Plasmodium knowlesi PKH_021240 N 0.720
PVX_081705 Plasmodium vivax PVX_081705 N 0.720
PY00093 Plasmodium yoelii PY00093 N 0.720
PCHAS_021050 Plasmodium chabaudi PCHAS_021050 N 0.720
PF07_0117 Plasmodium falciparum PF07_0117 N 0.720
PBANKA_021210 Plasmodium berghei PBANKA_021210 N 0.720
Chro.70587 Cryptosporidium hominis Chro.70587 I 0.720
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.720
mgf006782m Mimulus guttatus mgf006782m I 0.711
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.711
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.711
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.707
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.707
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.707
CMU_019420 Cryptosporidium muris CMU_019420 N 0.707