SNAPOd2T00029081001 (Oikopleura dioica)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 SNAPOd2T00029081001 T20541_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00029081001 KH 161 209

Links

Other KH family RBPs
Other Oikopleura dioica RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.780
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.700
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.700
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.760
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.720
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.700
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.720
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.720
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.700
PNO1 Canis familiaris ENSCAFG00000003256 N 0.700
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.700
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.700
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.700
pno1 Danio rerio ENSDARG00000008502 N 0.740
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.740
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.700
GF20246 Drosophila ananassae FBgn0097253 N 0.725
GG19285 Drosophila erecta FBgn0111489 N 0.725
GH12628 Drosophila grimshawi FBgn0120107 N 0.745
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.725
GI11042 Drosophila mojavensis FBgn0133805 N 0.725
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.745
GM23025 Drosophila sechellia FBgn0177893 N 0.725
GD17488 Drosophila simulans FBgn0189040 N 0.725
GJ15820 Drosophila virilis FBgn0203007 N 0.745
GK20148 Drosophila willistoni FBgn0222145 N 0.745
GE17874 Drosophila yakuba FBgn0068478 N 0.725
LOC100061904 Equus caballus ENSECAG00000011263 N 0.700
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.700
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.720
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.700
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.700
PNO1 Homo sapiens ENSG00000115946 N 0.700
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.720
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.700
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.700
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.700
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.700
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.720
PNO1 Microcebus murinus ENSMICG00000010897 N 0.700
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.700
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.700
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.780
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.700
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.700
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 1.000
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.700
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.700
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.700
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.740
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.700
PHUM356890 Pediculus humanus PHUM356890 N 0.740
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.700
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.700
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.700
PPA25260 Pristionchus pacificus PPA25260 N 0.735
PNO1 Procavia capensis ENSPCAG00000016146 N 0.700
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.700
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.700
28525.m000262 Ricinus communis 28525.m000262 N 0.700
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.740
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.740
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.740
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.740
PNO1 Sus scrofa ENSSSCG00000008352 N 0.700
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.720
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.720
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.720
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.720
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.700
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.700
AAH42279 Xenopus laevis AAH42279 N 0.720
AAQ24169 Xenopus laevis AAQ24169 N 0.720
Q8AVH4 Xenopus laevis Q8AVH4 N 0.720
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.720