fgenesh2_pg.scaffold_196000015 (Branchiostoma floridae)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_pg.scaffold_196000015 T21110_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_196000015 KH 85 134

Links

Other KH family RBPs
Other Branchiostoma floridae RBPs

223 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 1.000
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.960
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.960
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.960
pno1 Danio rerio ENSDARG00000008502 N 0.960
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.960
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.960
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.940
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.940
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.940
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.920
AAH42279 Xenopus laevis AAH42279 N 0.920
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.920
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.920
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.920
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.920
Q8AVH4 Xenopus laevis Q8AVH4 N 0.920
AAQ24169 Xenopus laevis AAQ24169 N 0.920
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.920
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.900
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.900
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.900
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.900
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.900
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.900
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.900
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.900
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.900
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.900
PNO1 Microcebus murinus ENSMICG00000010897 N 0.900
PNO1 Sus scrofa ENSSSCG00000008352 N 0.900
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.900
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.900
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.900
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.900
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.900
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.900
PNO1 Procavia capensis ENSPCAG00000016146 N 0.900
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.900
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.900
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.900
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.900
LOC100061904 Equus caballus ENSECAG00000011263 N 0.900
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.900
PNO1 Canis familiaris ENSCAFG00000003256 N 0.900
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.900
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.900
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.900
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.900
PNO1 Homo sapiens ENSG00000115946 N 0.900
Pno1 Mus musculus ENSMUSG00000020116 N 0.880
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.880
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.860
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.860
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.860
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.860
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.840
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.840
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.840
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.840
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.840
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.840
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.840
GK20148 Drosophila willistoni FBgn0222145 N 0.824
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.820
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.820
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.820
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.820
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.820
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.820
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.820
GH12628 Drosophila grimshawi FBgn0120107 N 0.804
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.804
GJ15820 Drosophila virilis FBgn0203007 N 0.804
28525.m000262 Ricinus communis 28525.m000262 N 0.800
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.800
LOAG_05624 Loa loa LOAG_05624 N 0.800
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.800
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.800
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.800
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.800
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.800
estExt_fgenesh2_pm.C_sca_70005 Lottia gigantea estExt_fgenesh2_pm.C_sca_70005 N 0.800
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.800
Bm1_42995 Brugia malayi Bm1_42995 N 0.800
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.800
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.784
GM23025 Drosophila sechellia FBgn0177893 N 0.784
GD17488 Drosophila simulans FBgn0189040 N 0.784
GI11042 Drosophila mojavensis FBgn0133805 N 0.784
GG19285 Drosophila erecta FBgn0111489 N 0.784
GE17874 Drosophila yakuba FBgn0068478 N 0.784
GF20246 Drosophila ananassae FBgn0097253 N 0.784
PK08146.1 Cannabis sativa PK08146.1 N 0.780
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.780
MDP0000754021 Malus x domestica MDP0000754021 N 0.780
ppa009897m Prunus persica ppa009897m N 0.780
ppa011086m Prunus persica ppa011086m N 0.780
MDP0000136407 Malus x domestica MDP0000136407 N 0.780
MDP0000120063 Malus x domestica MDP0000120063 N 0.780
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.780
PHUM356890 Pediculus humanus PHUM356890 N 0.780
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.780
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.780
MDP0000265633 Malus x domestica MDP0000265633 N 0.780
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.780
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.780
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.780
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.780
pno1 Dictyostelium discoideum DDB_G0287557 N 0.760
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.760
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.760
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.760
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.760
PPA25260 Pristionchus pacificus PPA25260 N 0.760
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.760
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.760
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.760
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.760
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.760
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.760
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.760
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.760
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.740
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.740
SB03G036840 Sorghum bicolor Sb03g036840 N 0.740
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.740
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.740
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.740
Minc09852 Meloidogyne incognita Minc09852 N 0.740
Minc08810 Meloidogyne incognita Minc08810 N 0.740
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.740
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.740
CTRG_05813 Candida tropicalis CTRG_05813 N 0.740
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.740
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.740
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.740
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.740
s_468317 Phytophthora sojae s_468317 N 0.740
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.740
mgf006621m Mimulus guttatus mgf006621m N 0.740
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.740
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.740
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.740
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.740
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.740
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.740
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.740
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.740
PTTG_01898 Puccinia triticina PTTG_01898 N 0.740
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.740
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.740
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.740
estExt_fgeneshHS_pm.C_280002 Naegleria gruberi estExt_fgeneshHS_pm.C_280002 N 0.740
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.740
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.740
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.740
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.740
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.740
PITG_01680 Phytophthora infestans PITG_01680 N 0.740
orf19.7618 Candida albicans orf19.7618 N 0.740
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.740
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.720
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.720
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.720
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.720
0700010277 Ostreococcus tauri 0700010277 N 0.720
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.720
CJA15618 Caenorhabditis japonica CJA15618 N 0.720
CPIJ015853 Culex quinquefasciatus CPIJ015853 N 0.720
CPIJ019677 Culex quinquefasciatus CPIJ019677 N 0.720
SNAPOd2T00029081001 Oikopleura dioica SNAPOd2T00029081001 N 0.720
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 0.720
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.720
PNO1 Saccharomyces cerevisiae YOR145C N 0.720
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.720
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.720
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.720
PNO1 Ashbya gossypii PNO1 N 0.720
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.720
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.720
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.720
CpipJ_CPIJ019677 Culex pipiens CpipJ_CPIJ019677 N 0.720
CpipJ_CPIJ015853 Culex pipiens CpipJ_CPIJ015853 N 0.720
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.720
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.720
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.720
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.720
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.720
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.720
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.720
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.706
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.700
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.700
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.700
ATEG_07413 Aspergillus terreus CADATEAG00001505 N 0.700
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.700
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.700
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.700
MCYG_07269 Microsporum canis MCYG_07269 N 0.700
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.700
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.700
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.700
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.700
mgf019585m Mimulus guttatus mgf019585m N 0.700
EDP42908.1 Malassezia globosa EDP42908.1 N 0.700
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.700
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.700
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.700
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.700
CRE05188 Caenorhabditis remanei CRE05188 N 0.700
CBN06104 Caenorhabditis brenneri CBN06104 N 0.700
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.700
Y53C12B.2 Caenorhabditis elegans Y53C12B.2 N 0.700
EDI_198550 Entamoeba dispar EDI_198550 N 0.700
CBG01042 Caenorhabditis briggsae CBG01042 N 0.700
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.700
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.700
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.700
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.700
TERG_01665 Trichophyton rubrum TERG_01665 N 0.700
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.700
EHI_065870 Entamoeba histolytica EHI_065870 N 0.700