ENSCING00000009577 (Ciona intestinalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCING00000009577 T18515_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000019477 KH 161 210

Links

Other KH family RBPs
Other Ciona intestinalis RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 1.000
GK20148 Drosophila willistoni FBgn0222145 N 0.863
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.860
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.860
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.860
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.860
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.860
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.860
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.860
pno1 Danio rerio ENSDARG00000008502 N 0.860
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.860
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.860
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.860
GH12628 Drosophila grimshawi FBgn0120107 N 0.843
GJ15820 Drosophila virilis FBgn0203007 N 0.843
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.843
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.840
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.840
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.840
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.840
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.840
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.840
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.840
GF20246 Drosophila ananassae FBgn0097253 N 0.824
GE17874 Drosophila yakuba FBgn0068478 N 0.824
GM23025 Drosophila sechellia FBgn0177893 N 0.824
GD17488 Drosophila simulans FBgn0189040 N 0.824
GG19285 Drosophila erecta FBgn0111489 N 0.824
GI11042 Drosophila mojavensis FBgn0133805 N 0.824
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.824
AAH42279 Xenopus laevis AAH42279 N 0.820
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.820
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.820
AAQ24169 Xenopus laevis AAQ24169 N 0.820
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.820
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.820
Pno1 Mus musculus ENSMUSG00000020116 N 0.820
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.820
Q8AVH4 Xenopus laevis Q8AVH4 N 0.820
pno1 Dictyostelium discoideum DDB_G0287557 N 0.800
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.800
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.800
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.800
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.800
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.800
PNO1 Canis familiaris ENSCAFG00000003256 N 0.800
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.800
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.800
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.800
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.800
PNO1 Microcebus murinus ENSMICG00000010897 N 0.800
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.800
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.800
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.800
PNO1 Homo sapiens ENSG00000115946 N 0.800
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.800
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.800
LOC100061904 Equus caballus ENSECAG00000011263 N 0.800
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.800
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.800
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.800
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.800
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.800
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.800
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.800
PNO1 Sus scrofa ENSSSCG00000008352 N 0.800
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.800
PNO1 Procavia capensis ENSPCAG00000016146 N 0.800
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.800
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.800
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.800
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.800
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.780
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.780
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.780
LOAG_05624 Loa loa LOAG_05624 N 0.780
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.780
Bm1_42995 Brugia malayi Bm1_42995 N 0.780
PHUM356890 Pediculus humanus PHUM356890 N 0.780
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.760
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.760
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.760
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.760
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.760
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.760
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.760
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.760
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.760
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.760
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.740
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.740
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.740
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.740
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.740
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.740
CPIJ019677 Culex quinquefasciatus CPIJ019677 N 0.740
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.740
estExt_fgenesh2_pm.C_sca_70005 Lottia gigantea estExt_fgenesh2_pm.C_sca_70005 N 0.740
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.740
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.740
CPIJ015853 Culex quinquefasciatus CPIJ015853 N 0.740
CpipJ_CPIJ019677 Culex pipiens CpipJ_CPIJ019677 N 0.740
PPA25260 Pristionchus pacificus PPA25260 N 0.740
CpipJ_CPIJ015853 Culex pipiens CpipJ_CPIJ015853 N 0.740
PTTG_01898 Puccinia triticina PTTG_01898 N 0.720
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.720
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.720
PITG_01680 Phytophthora infestans PITG_01680 N 0.720
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.720
28525.m000262 Ricinus communis 28525.m000262 N 0.720
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.720
CJA15618 Caenorhabditis japonica CJA15618 N 0.720
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.720
s_468317 Phytophthora sojae s_468317 N 0.720
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.720
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.720
EDP42908.1 Malassezia globosa EDP42908.1 N 0.720
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.720
CRE05188 Caenorhabditis remanei CRE05188 N 0.700
CBG01042 Caenorhabditis briggsae CBG01042 N 0.700
PK08146.1 Cannabis sativa PK08146.1 N 0.700
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.700
AAEL011832 Aedes aegypti AAEL011832 N 0.700
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.700
CBN06104 Caenorhabditis brenneri CBN06104 N 0.700
estExt_fgeneshHS_pm.C_280002 Naegleria gruberi estExt_fgeneshHS_pm.C_280002 N 0.700
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.700
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.700
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.700
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.700
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.700
27316 Aureococcus anophagefferens 27316 N 0.700
SNAPOd2T00029081001 Oikopleura dioica SNAPOd2T00029081001 N 0.700
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.700
Y53C12B.2 Caenorhabditis elegans Y53C12B.2 N 0.700
TvY486_0905560 Trypanosoma vivax TvY486_0905560 N 0.700
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 0.700
mgf006621m Mimulus guttatus mgf006621m N 0.700
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.700
MDP0000265633 Malus x domestica MDP0000265633 N 0.700
MDP0000754021 Malus x domestica MDP0000754021 N 0.700
ppa009897m Prunus persica ppa009897m N 0.700
ppa011086m Prunus persica ppa011086m N 0.700
MDP0000136407 Malus x domestica MDP0000136407 N 0.700
MDP0000120063 Malus x domestica MDP0000120063 N 0.700
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.700
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.700
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.700
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.700
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.700