cassava12379.valid.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava12379.valid.m1 T27301_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12379.valid.m1 RanBP ZF 281 310
cassava12379.valid.m1 RanBP ZF 314 343

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002873808.1 Arabidopsis lyrata Al_scaffold_0006_1692 N 0.770
VAR3 Arabidopsis thaliana AT5G17790-TAIR-G N 0.787
BRADI2G53210 Brachypodium distachyon BRADI2G53210 N 0.867
PK08935.1 Cannabis sativa PK08935.1 N 0.900
Cucsa.337020 Cucumis sativus Cucsa.337020 N 0.902
Glyma19g29710.1 Glycine max Glyma19g29710.1 N 0.852
Glyma03g00950.1 Glycine max Glyma03g00950.1 N 0.820
LjT26C04.50.nd Lotus japonicus LjT26C04.50.nd N 0.883
MDP0000224484 Malus x domestica MDP0000224484 N 0.883
Medtr7g103850 Medicago truncatula Medtr7g103850 N 0.900
LOC_Os01g59980 Oryza sativa LOC_Os01g59980 N 0.800
POPTR_0013s06350 Populus trichocarpa POPTR_0013s06350 N 0.717
ppa001151m Prunus persica ppa001151m N 0.917
29818.m000389 Ricinus communis 29818.m000389 N 0.933
SB03G037900 Sorghum bicolor Sb03g037900 N 0.817
GSVIVG00029939001 Vitis vinifera GSVIVG00029939001 N 0.917
GRMZM2G069106 Zea mays GRMZM2G069106 N 0.817
GRMZM2G312244 Zea mays GRMZM2G312244 N 0.817