CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_04453
(
Botrytis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BC1G_04453
T28220_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_04453
RRM
139
209
VYIGCIPHGFYEAEMKAYFSQFGDILKIRLSRNRRTGASKHYAWIQFASRGVAEIVSKTMDKYLLFNHILK
Links
Other
RRM
family RBPs
Other
Botrytis cinerea
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ANIA_04346
Aspergillus nidulans
CADANIAG00006114
N
0.718
An04g00680
Aspergillus niger
CADANGAG00003776
N
0.704
ATEG_05588
Aspergillus terreus
CADATEAG00005000
N
0.704
CIMG_04180
Coccidioides immitis
CIMG_04180
N
0.718
CPSG_03082
Coccidioides posadasii
CPSG_03082
N
0.718
Pc22g17020
Penicillium chrysogenum
Pc22g17020
N
0.704
SS1G_03893
Sclerotinia sclerotiorum
SS1G_03893
N
0.944
estExt_fgenesh1_pg.C_90140
Trichoderma atroviride
estExt_fgenesh1_pg.C_90140
N
0.704
e_gw1.1.997.1
Trichoderma reesei
e_gw1.1.997.1
N
0.704
e_gw1.17.425.1
Trichoderma virens
e_gw1.17.425.1
N
0.704