CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_04346
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00006114
T33631_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00006114
RRM
212
282
VYVGRIPHGFYEHQMRAYFSQFGDITKLRLSRNRHTGKSKHYAFIEFASESVAKIVAATMDNYLMYGHILK
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
An04g00680
Aspergillus niger
CADANGAG00003776
N
0.944
fgenesh1_pm.00609_#_590
Aspergillus carbonarius
fgenesh1_pm.00609_#_590
N
0.930
ATEG_05588
Aspergillus terreus
CADATEAG00005000
N
0.930
AFUA_4G06350
Aspergillus fumigatus
CADAFUAG00008260
N
0.901
ACLA_045660
Aspergillus clavatus
CADACLAG00004652
N
0.873
NFIA_109800
Neosartorya fischeri
CADNFIAG00009499
N
0.873
PMAA_027560
Penicillium marneffei
PMAA_027560
N
0.873
AFLA_113610
Aspergillus flavus
CADAFLAG00005095
N
0.873
AO090023000955
Aspergillus oryzae
CADAORAG00008034
N
0.873
ARB_01674
Arthroderma benhamiae
ARB_01674
N
0.859
TRV_00034
Trichophyton verrucosum
TRV_00034
N
0.859
TESG_01475
Trichophyton tonsurans
TESG_01475
N
0.859
TERG_07689
Trichophyton rubrum
TERG_07689
N
0.859
TEQG_06916
Trichophyton equinum
TEQG_06916
N
0.859
CPSG_03082
Coccidioides posadasii
CPSG_03082
N
0.859
CIMG_04180
Coccidioides immitis
CIMG_04180
N
0.859
Pc22g17020
Penicillium chrysogenum
Pc22g17020
N
0.859
MGYG_01823
Microsporum gypseum
MGYG_01823
N
0.845
MCYG_01275
Microsporum canis
MCYG_01275
N
0.845
BDBG_06195
Blastomyces dermatitidis
BDBG_06195
N
0.831
PABG_04180
Paracoccidioides brasiliensis
PABG_04180
N
0.831
UREG_05625
Uncinocarpus reesii
UREG_05625
N
0.803
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.789
CC1G_06273
Coprinopsis cinerea
CC1G_06273
N
0.775
e_gw1.87.91.1
Postia placenta
e_gw1.87.91.1
N
0.761
fgenesh1_pg.C_scaffold_4000265
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000265
N
0.761
estExt_Genewise1Plus.C_30445
Agaricus bisporus
estExt_Genewise1Plus.C_30445
N
0.761
estExt_Genewise1Plus.C_200094
Postia placenta
estExt_Genewise1Plus.C_200094
N
0.761
SS1G_03893
Sclerotinia sclerotiorum
SS1G_03893
N
0.746
SPPG_07834
Spizellomyces punctatus
SPPG_07834
N
0.732
VDBG_05329
Verticillium albo atrum
VDBG_05329
N
0.732
augustus-scaffold_1.g441
Schizophyllum commune
augustus-scaffold_1.g441
N
0.732
VDAG_06981
Verticillium dahliae
VDAG_06981
N
0.732
BC1G_04453
Botrytis cinerea
BC1G_04453
N
0.718
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.718
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.718
YALI0F14245g
Yarrowia lipolytica
YALI0F14245g
N
0.718
DEHA0A05764g
Debaryomyces hansenii
DEHA0A05764g
N
0.718
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.704
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.704
e_gw1.35.197.1
Physcomitrella patens
e_gw1.35.197.1
N
0.704
Pa_3_7140
Podospora anserina
Pa_3_7140
N
0.704
estExt_fgenesh2_kg.C_71062
Serpula lacrymans
estExt_fgenesh2_kg.C_71062
N
0.704
estExt_fgenesh1_pg.C_90140
Trichoderma atroviride
estExt_fgenesh1_pg.C_90140
N
0.704