CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_09693
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00004149
T33743_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00004149
RRM
4
58
TDFSRCGEIKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIR
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002863560.1
Arabidopsis lyrata
fgenesh2_kg.8__389__AT5G44200.2
N
0.000
CBP20
Arabidopsis thaliana
AT5G44200-TAIR-G
N
0.000
BRADI3G48560
Brachypodium distachyon
BRADI3G48560
N
0.000
PK11911.1
Cannabis sativa
PK11911.1
N
0.000
Cucsa.174450
Cucumis sativus
Cucsa.174450
N
0.000
Glyma12g33400.1
Glycine max
Glyma12g33400.1
N
0.000
Glyma13g37030.1
Glycine max
Glyma13g37030.1
N
0.000
chr3.CM0160.780.nd
Lotus japonicus
chr3.CM0160.780.nd
N
0.000
MDP0000315402
Malus x domestica
MDP0000315402
N
0.000
cassava43646.valid.m1
Manihot esculenta
cassava43646.valid.m1
N
0.000
cassava43645.valid.m1
Manihot esculenta
cassava43645.valid.m1
N
0.000
mgf009822m
Mimulus guttatus
mgf009822m
N
0.000
LOC_Os02g39890
Oryza sativa
LOC_Os02g39890
N
0.000
PDK_20s1327431g003
Phoenix dactylifera
PDK_20s1327431g003
N
0.000
B9MYE5_POPTR
Populus trichocarpa
POPTR_0017s04640
N
0.000
A9PIB0_POPTR
Populus trichocarpa
POPTR_0007s01170
N
0.000
ppa010346m
Prunus persica
ppa010346m
N
0.000
29983.m003140
Ricinus communis
29983.m003140
N
0.000
e_gw1.80.70.1
Selaginella moellendorfii
e_gw1.80.70.1
N
0.000
SB04G025800
Sorghum bicolor
Sb04g025800
N
0.000
GSVIVG00020599001
Vitis vinifera
GSVIVG00020599001
N
0.000
GRMZM2G034804
Zea mays
GRMZM2G034804
N
0.000