B9MYE5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0017s04640 T45684_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s04640.1 RRM 36 106

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.972
ppa010346m Prunus persica ppa010346m N 0.944
MDP0000315402 Malus x domestica MDP0000315402 N 0.944
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.944
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.930
29983.m003140 Ricinus communis 29983.m003140 N 0.930
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.930
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.915
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.915
SB04G025800 Sorghum bicolor Sb04g025800 N 0.901
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.901
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.901
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.901
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.901
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.901
PK11911.1 Cannabis sativa PK11911.1 N 0.887
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.873
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.873
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.873
mgf009822m Mimulus guttatus mgf009822m N 0.831
mgf009384m Mimulus guttatus mgf009384m N 0.789
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.746
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.732
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.732
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.704
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.704