CBP20 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G44200-TAIR-G T32834_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G44200.1-P RRM 36 106
AT5G44200.2-P RRM 36 106

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 1.000
29983.m003140 Ricinus communis 29983.m003140 N 0.972
MDP0000315402 Malus x domestica MDP0000315402 N 0.958
ppa010346m Prunus persica ppa010346m N 0.958
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.944
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.944
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.930
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.930
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.915
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.915
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.915
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.915
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.901
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.901
PK11911.1 Cannabis sativa PK11911.1 N 0.901
SB04G025800 Sorghum bicolor Sb04g025800 N 0.901
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.901
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.901
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.873
mgf009822m Mimulus guttatus mgf009822m N 0.831
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.817
mgf009384m Mimulus guttatus mgf009384m N 0.789
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.761
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.761
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.732
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.718
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.718
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.718
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.718
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.718
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.718
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.718
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.718
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.718
NCBP2 Homo sapiens ENSG00000114503 N 0.718
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.718
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.718
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.718
NCBP2 Equus caballus ENSECAG00000016153 N 0.718
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.718
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.718
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.718
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.718
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.718
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.718
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.718
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.704
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.704
LOAG_03270 Loa loa LOAG_03270 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.704
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.704
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.704
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.704
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.704
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.704
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.704
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.704
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704