CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3bp2
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000002433
T41019_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000003346
RRM
300
366
LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGE
ENSRNOP00000043045
RRM
333
399
LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R007258
Ailuropoda melanoleuca
Ame_R007258
I
1.000
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.731
G3BP2
Anolis carolinensis
ENSACAG00000008695
I
0.970
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.716
Q2KJ17_BOVIN
Bos taurus
ENSBTAG00000014041
I
1.000
G3BP1_BOVIN
Bos taurus
ENSBTAG00000020309
I
0.716
e_gw.517.12.1
Branchiostoma floridae
e_gw.517.12.1
I
0.714
e_gw.9.159.1
Branchiostoma floridae
e_gw.9.159.1
I
0.714
LOC100413275
Callithrix jacchus
ENSCJAG00000019897
I
1.000
G3BP1
Callithrix jacchus
ENSCJAG00000015407
I
0.716
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.731
G3BP2
Canis familiaris
ENSCAFG00000008371
I
1.000
ENSCPOG00000006626
Cavia porcellus
ENSCPOG00000006626
I
0.716
G3BP2
Cavia porcellus
ENSCPOG00000012052
I
1.000
ENSCHOG00000010802
Choloepus hoffmanni
ENSCHOG00000010802
I
0.716
G3BP2
Choloepus hoffmanni
ENSCHOG00000005346
I
0.970
G3BP2
Danio rerio
ENSDARG00000074572
I
0.910
g3bp1
Danio rerio
ENSDARG00000017741
I
0.701
g3bp2
Danio rerio
ENSDARG00000014790
I
0.881
ENSDARG00000011704
Danio rerio
ENSDARG00000011704
I
0.910
G3BP2
Dasypus novemcinctus
ENSDNOG00000012491
I
0.970
G3BP1
Dasypus novemcinctus
ENSDNOG00000018758
I
0.716
G3bp2
Dipodomys ordii
ENSDORG00000004825
I
1.000
G3BP1
Echinops telfairi
ENSETEG00000017447
I
0.716
G3BP2
Echinops telfairi
ENSETEG00000016219
I
0.955
LOC100060090
Equus caballus
ENSECAG00000003368
I
0.716
G3BP2
Equus caballus
ENSECAG00000007917
I
1.000
G3BP1
Erinaceus europaeus
ENSEEUG00000012278
I
0.716
G3BP2
Erinaceus europaeus
ENSEEUG00000013436
I
1.000
G3BP2
Felis catus
ENSFCAG00000010124
I
1.000
G3BP2
Gallus gallus
ENSGALG00000010882
I
0.970
G3BP1
Gasterosteus aculeatus
ENSGACG00000016848
I
0.701
G3BP2
Gasterosteus aculeatus
ENSGACG00000017342
I
0.896
G3BP2
Gorilla gorilla
ENSGGOG00000014947
I
1.000
G3BP1
Homo sapiens
ENSG00000145907
D
0.731
G3BP2
Homo sapiens
ENSG00000138757
D
1.000
G3BP1
Loxodonta africana
ENSLAFG00000009182
I
0.716
G3BP2
Loxodonta africana
ENSLAFG00000023321
I
1.000
G3BP1
Macaca mulatta
ENSMMUG00000014701
I
0.716
G3BP2
Macaca mulatta
ENSMMUG00000002153
I
1.000
G3BP2
Macropus eugenii
ENSMEUG00000004126
I
0.985
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.761
G3BP2
Meleagris gallopavo
ENSMGAG00000007221
I
0.970
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.731
G3BP2
Microcebus murinus
ENSMICG00000007795
I
1.000
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.701
G3BP2
Monodelphis domestica
ENSMODG00000019205
I
0.985
G3bp2
Mus musculus
ENSMUSG00000029405
I
1.000
G3bp1
Mus musculus
ENSMUSG00000018583
I
0.716
G3BP2
Myotis lucifugus
ENSMLUG00000004753
I
1.000
G3BP1
Myotis lucifugus
ENSMLUG00000001581
I
0.716
G3BP1
Ochotona princeps
ENSOPRG00000010562
I
0.731
G3BP2
Ochotona princeps
ENSOPRG00000006307
I
1.000
ENSOANG00000004714
Ornithorhynchus anatinus
ENSOANG00000004714
I
0.985
G3BP1
Ornithorhynchus anatinus
ENSOANG00000005110
I
0.761
G3BP2
Oryctolagus cuniculus
ENSOCUG00000003262
I
1.000
ENSOCUG00000022143
Oryctolagus cuniculus
ENSOCUG00000022143
I
0.716
ENSOCUG00000022069
Oryctolagus cuniculus
ENSOCUG00000022069
I
0.716
G3BP2
Oryzias latipes
ENSORLG00000007012
I
0.925
G3BP1
Oryzias latipes
ENSORLG00000011422
I
0.731
G3BP2
Otolemur garnettii
ENSOGAG00000000157
I
1.000
G3BP2
Pan troglodytes
ENSPTRG00000016175
I
1.000
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.731
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.731
ENSPPYG00000014846
Pongo pygmaeus
ENSPPYG00000014846
I
1.000
G3BP2
Procavia capensis
ENSPCAG00000015109
I
1.000
G3BP2
Pteropus vampyrus
ENSPVAG00000010166
I
1.000
G3BP1
Pteropus vampyrus
ENSPVAG00000017250
I
0.716
ENSRNOG00000001595
Rattus norvegicus
ENSRNOG00000001595
I
0.836
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.716
G3BP2
Sorex araneus
ENSSARG00000009503
I
1.000
ENSSSCG00000017079
Sus scrofa
ENSSSCG00000017079
I
0.716
ENSSSCG00000017080
Sus scrofa
ENSSSCG00000017080
I
0.716
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.761
G3BP2
Taeniopygia guttata
ENSTGUG00000001561
I
0.970
G3BP2
Takifugu rubripes
ENSTRUG00000011405
I
0.910
G3BP2
Tarsius syrichta
ENSTSYG00000011860
N
0.701
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.716
G3BP1
Tetraodon nigroviridis
ENSTNIG00000012954
I
0.716
G3BP2
Tetraodon nigroviridis
ENSTNIG00000011044
I
0.896
G3BP1
Tupaia belangeri
ENSTBEG00000004386
I
0.716
ENSTBEG00000012323
Tupaia belangeri
ENSTBEG00000012323
I
1.000
ENSTBEG00000008258
Tupaia belangeri
ENSTBEG00000008258
I
0.985
G3BP2
Tursiops truncatus
ENSTTRG00000013795
I
0.985
G3BP2
Vicugna pacos
ENSVPAG00000010710
I
1.000
G3BP1
Vicugna pacos
ENSVPAG00000004461
I
0.716
AAH76729
Xenopus laevis
AAH76729
I
0.851
g3bp2
Xenopus tropicalis
ENSXETG00000000334
I
0.896
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.731