ENSRNOG00000023438 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000023438 T41160_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.858
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.858
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.858
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.837
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000028978 RRM 17 86
ENSRNOP00000028978 RRM 102 171
ENSRNOP00000047082 RRM 21 90
ENSRNOP00000047082 RRM 105 174

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

202 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC616011 Bos taurus ENSBTAG00000001432 N 0.000
Q3T0H4_BOVIN Bos taurus ENSBTAG00000016818 N 0.000
LOC100409512 Callithrix jacchus ENSCJAG00000006259 N 0.000
ENSCAFG00000001857 Canis familiaris ENSCAFG00000001857 N 0.000
XM_535332.2 Canis familiaris ENSCAFG00000011131 N 0.000
ENSCPOG00000000106 Cavia porcellus ENSCPOG00000000106 N 0.000
ENSCPOG00000022394 Cavia porcellus ENSCPOG00000022394 N 0.000
ZCCHC17 Choloepus hoffmanni ENSCHOG00000001581 N 0.000
Zcchc17 Dipodomys ordii ENSDORG00000004128 N 0.000
ZCCHC17 Echinops telfairi ENSETEG00000007421 N 0.000
LOC100056288 Equus caballus ENSECAG00000025040 N 0.000
ZCCHC17 Erinaceus europaeus ENSEEUG00000014855 N 0.000
ZCCHC17 Felis catus ENSFCAG00000004196 N 0.000
Q6R2T1_CHICK Gallus gallus ENSGALG00000000618 N 0.000
ZCCHC17 Gorilla gorilla ENSGGOG00000009126 N 0.000
ZCCHC17 Homo sapiens ENSG00000121766 N 0.000
ZCCHC17 Loxodonta africana ENSLAFG00000015364 N 0.000
ZCCHC17 Macaca mulatta ENSMMUG00000012156 N 0.000
ZCCHC17 Meleagris gallopavo ENSMGAG00000000777 N 0.000
ZCCHC17 Microcebus murinus ENSMICG00000009354 N 0.000
XP_001381726.1 Monodelphis domestica ENSMODG00000017082 N 0.000
Zcchc17 Mus musculus ENSMUSG00000028772 N 0.000
ZCCHC17 Myotis lucifugus ENSMLUG00000000594 N 0.000
ZCCHC17 Ochotona princeps ENSOPRG00000014449 N 0.000
ENSOCUG00000014599 Oryctolagus cuniculus ENSOCUG00000014599 N 0.000
ZCCHC17 Pan troglodytes ENSPTRG00000000456 N 0.000
ENSPPYG00000001617 Pongo pygmaeus ENSPPYG00000001617 N 0.000
ZCCHC17 Procavia capensis ENSPCAG00000011665 N 0.000
ZCCHC17 Pteropus vampyrus ENSPVAG00000014747 N 0.000
Zcchc17 Rattus norvegicus ENSRNOG00000012266 N 0.000
ZCCHC17 Tarsius syrichta ENSTSYG00000000490 N 0.000
ZCCHC17 Tursiops truncatus ENSTTRG00000014870 N 0.000
ZCCHC17 Vicugna pacos ENSVPAG00000003834 N 0.000