D3ZX95_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000027006 T41183_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.801
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.801
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.801
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.787
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000044263 RRM 15 84
ENSRNOP00000044263 RRM 106 171

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

206 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.000
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.000
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
GSPATP00022892001 Paramecium tetraurelia GSPATP00022892001 N 0.000
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.000
THAPSDRAFT_268598 Thalassiosira pseudonana Thaps268598 N 0.000
fgeneshTA2_pg.C_scaffold_1000697 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_1000697 N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000