THAPSDRAFT_268598 (Thalassiosira pseudonana)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Thaps268598 T20309_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps268598 KH 163 212

Links

Other KH family RBPs
Other Thalassiosira pseudonana RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.820
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.800
YALI0F30393g Yarrowia lipolytica YALI0F30393g N 0.800
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.784
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.780
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.780
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.780
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.780
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.780
estExt_fgenesh3_pm.C_180006 Postia placenta estExt_fgenesh3_pm.C_180006 N 0.780
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.780
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.780
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.765
XP_002158002.1 Hydra magnipapillata XP_002158002.1 N 0.760
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.760
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.760
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.760
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.760
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.760
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.760
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.760
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.760
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.760
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.760
FGSG_06203 Fusarium graminearum FGSG_06203 N 0.760
estExt_fgenesh1_pg.C_chr_50346 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_50346 N 0.760
e_gw1.11.691.1 Mycosphaerella fijiensis e_gw1.11.691.1 N 0.760
KRR1 Saccharomyces cerevisiae YCL059C N 0.760
Genemark.4150_g Heterobasidion annosum Genemark.4150_g N 0.740
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.740
fgenesh2_kg.4_#_366_#_2882_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_366_#_2882_1_CFPN N 0.740
fgenesh1_pm.C_scaffold_4000135 Pleurotus ostreatus fgenesh1_pm.C_scaffold_4000135 N 0.740
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.740
PMAA_048600 Penicillium marneffei PMAA_048600 N 0.740
BDBG_00628 Blastomyces dermatitidis BDBG_00628 N 0.740
GSPATP00022892001 Paramecium tetraurelia GSPATP00022892001 N 0.740
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.740
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.740
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.740
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.740
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.740
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.740
Medtr5g094630 Medicago truncatula Medtr5g094630 N 0.740
estExt_fgenesh2_pm.C_40064 Thielavia terrestris estExt_fgenesh2_pm.C_40064 N 0.740
estExt_Genewise1.C_80450 Myceliophthora thermophila estExt_Genewise1.C_80450 N 0.740
EDP43963.1 Malassezia globosa EDP43963.1 N 0.740
e_gw1.1.3483.1 Schizophyllum commune e_gw1.1.3483.1 N 0.740
e_gw1.10.100.1 Phycomyces blakesleeanus e_gw1.10.100.1 N 0.740
XP_002489989.1 Pichia pastoris XP_002489989.1 N 0.731
Aqu1.217752 Amphimedon queenslandica Aqu1.217752 N 0.725
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.725
ZYRO0F18458g Zygosaccharomyces rouxii ZYRO0F18458g N 0.725
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.720
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.720
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.720
NCU07041 Neurospora crassa NCU07041 N 0.720
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.720
GE15854 Drosophila yakuba FBgn0233416 N 0.720
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.720
TGGT1_008040 Toxoplasma gondii TGGT1_008040 N 0.720
NCLIV_025560 Neospora caninum NCLIV_025560 N 0.720
LOC100050169 Equus caballus ENSECAG00000017498 N 0.720
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.720
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.720
TGME49_062070 Toxoplasma gondii TGME49_062070 N 0.720
KRR1 Felis catus ENSFCAG00000005207 N 0.720
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.720
KRR1 Homo sapiens ENSG00000111615 N 0.720
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.720
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.720
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.720
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.720
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.720
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.720
dbe Drosophila melanogaster FBgn0020305 N 0.720
GG24622 Drosophila erecta FBgn0116754 N 0.720
GA18062-RA Drosophila pseudoobscura FBgn0078070 N 0.720
GL18627 Drosophila persimilis FBgn0156228 N 0.720
GJ19628 Drosophila virilis FBgn0206770 N 0.720
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.720
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.720
KRR1 Sorex araneus ENSSARG00000009967 N 0.720
GK24616 Drosophila willistoni FBgn0226576 N 0.720
KRR1 Sus scrofa ENSSSCG00000000520 N 0.720
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.720
GI18007 Drosophila mojavensis FBgn0140747 N 0.720
TGVEG_072780 Toxoplasma gondii TGVEG_072780 N 0.720
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.720
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.720
CTRG_04103 Candida tropicalis CTRG_04103 N 0.720
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.720
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.720
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.720
eu2.Lbscf0025g00750 Laccaria bicolor eu2.Lbscf0025g00750 N 0.720
estExt_Genewise1Plus.C_120457 Neurospora discreta estExt_Genewise1Plus.C_120457 N 0.720
Pa_1_24010 Podospora anserina Pa_1_24010 N 0.720
MDP0000221204 Malus x domestica MDP0000221204 N 0.720
estExt_Genewise1.C_250056 Neurospora tetrasperma estExt_Genewise1.C_250056 N 0.720
MDP0000130613 Malus x domestica MDP0000130613 N 0.720
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.720
GLRG_02756 Colletotrichum graminicola GLRG_02756 N 0.720
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.720
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.720
estExt_fgenesh2_kg.C_20554 Agaricus bisporus estExt_fgenesh2_kg.C_20554 N 0.720
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.720
KRR1 Candida albicans orf19.661 N 0.720
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.720
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.720
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.720
KLTH0F00506g Kluyveromyces thermotolerans KLTH0F00506g N 0.717
ENSCSAVG00000008600 Ciona savignyi ENSCSAVG00000008600 N 0.706
e_gw1.7.987.1 Fragilariopsis cylindrus e_gw1.7.987.1 N 0.706
KRR1 Vicugna pacos ENSVPAG00000011750 N 0.700
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.700
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.700
gw1.3.2120.1 Cryphonectria parasitica gw1.3.2120.1 N 0.700
CC1G_09940 Coprinopsis cinerea CC1G_09940 N 0.700
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.700
RO3G_15602 Rhizopus oryzae RO3G_15602 N 0.700
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.700
PK22510.1 Cannabis sativa PK22510.1 N 0.700
KRR1 Danio rerio ENSDARG00000011246 N 0.700
KRR1 Loxodonta africana ENSLAFG00000015986 N 0.700
Krr1 Mus musculus ENSMUSG00000063334 N 0.700
KRR1 Takifugu rubripes ENSTRUG00000004380 N 0.700
XP_002154857.1 Hydra magnipapillata XP_002154857.1 N 0.700
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.700
Hrb2 Rattus norvegicus ENSRNOG00000004035 N 0.700
estExt_Genewise1Plus.C_250151 Melampsora laricis populina estExt_Genewise1Plus.C_250151 N 0.700