CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
RBM23
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000010354
T41629_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000009304
RRM
168
236
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPI
ENSSTOP00000009304
RRM
265
335
LYVGSLHFNITEDMLRGIFEPFGKXXXXXXXXXXXXXXXXXXXXXXFSDSECARRALEQLNGFELAGRPMR
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002885119.1
Arabidopsis lyrata
Al_scaffold_0003_1757
N
0.000
Cucsa.069370
Cucumis sativus
Cucsa.069370
N
0.000
Glyma17g03290.1
Glycine max
Glyma17g03290.1
N
0.000
B9N014_POPTR
Populus trichocarpa
POPTR_0008s23200
N
0.000
B9HXE2_POPTR
Populus trichocarpa
POPTR_0010s00780
N
0.000
ppa002599m
Prunus persica
ppa002599m
N
0.000
29726.m004103
Ricinus communis
29726.m004103
N
0.000