CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM23
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000010354
T41629_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000009304
RRM
168
236
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPI
ENSSTOP00000009304
RRM
265
335
LYVGSLHFNITEDMLRGIFEPFGKXXXXXXXXXXXXXXXXXXXXXXFSDSECARRALEQLNGFELAGRPMR
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002866061.1
Arabidopsis lyrata
fgenesh2_kg.8__1470__AT5G55670.1
N
0.000
AT5G55670
Arabidopsis thaliana
AT5G55670-TAIR-G
N
0.000
BRADI4G33020
Brachypodium distachyon
BRADI4G33020
N
0.000
BRADI3G38990
Brachypodium distachyon
BRADI3G38990
N
0.000
PK06988.1
Cannabis sativa
PK06988.1
N
0.000
PK28815.1
Cannabis sativa
PK28815.1
N
0.000
Cucsa.059360
Cucumis sativus
Cucsa.059360
N
0.000
Glyma18g08590.1
Glycine max
Glyma18g08590.1
N
0.000
Glyma18g08610.1
Glycine max
Glyma18g08610.1
N
0.000
Glyma08g44170.1
Glycine max
Glyma08g44170.1
N
0.000
Glyma08g44150.1
Glycine max
Glyma08g44150.1
N
0.000
chr6.CM0245.280.nd
Lotus japonicus
chr6.CM0245.280.nd
N
0.000
MDP0000642690
Malus x domestica
MDP0000642690
N
0.000
MDP0000138972
Malus x domestica
MDP0000138972
N
0.000
MDP0000162382
Malus x domestica
MDP0000162382
N
0.000
MDP0000551492
Malus x domestica
MDP0000551492
N
0.000
MDP0000643975
Malus x domestica
MDP0000643975
N
0.000
MDP0000491894
Malus x domestica
MDP0000491894
N
0.000
cassava35777.valid.m1
Manihot esculenta
cassava35777.valid.m1
N
0.000
cassava7045.valid.m1
Manihot esculenta
cassava7045.valid.m1
N
0.000
mgf006948m
Mimulus guttatus
mgf006948m
N
0.000
BGIOSIBCE030316
Oryza indica
BGIOSIBCE030316
N
0.000
BGIOSIBCE028312
Oryza indica
BGIOSIBCE028312
N
0.000
LOC_Os08g38240
Oryza sativa
LOC_Os08g38240
N
0.000
LOC_Os09g29980
Oryza sativa
LOC_Os09g29980
N
0.000
PDK_20s1577201g001
Phoenix dactylifera
PDK_20s1577201g001
N
0.000
e_gw1.42.153.1
Physcomitrella patens
e_gw1.42.153.1
N
0.000
e_gw1.138.6.1
Physcomitrella patens
e_gw1.138.6.1
N
0.000
B9HLD1_POPTR
Populus trichocarpa
POPTR_0008s18280
N
0.000
B9HTF7_POPTR
Populus trichocarpa
POPTR_0010s06150
N
0.000
ppa002814m
Prunus persica
ppa002814m
N
0.000
ppa002096m
Prunus persica
ppa002096m
N
0.000
29629.m001380
Ricinus communis
29629.m001380
N
0.000
29929.m004777
Ricinus communis
29929.m004777
N
0.000
SB07G028810
Sorghum bicolor
Sb07g028810
N
0.000
GRMZM2G107163
Zea mays
GRMZM2G107163
N
0.000
GRMZM2G475495
Zea mays
GRMZM2G475495
N
0.000
GRMZM2G131957
Zea mays
GRMZM2G131957
N
0.000