CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPM
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000011487
T42497_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000010536
RRM
35
105
AFITNIPFDVKWQSLKDLVKEKXXXXXXXXXXXXXXXXXXGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSTSYP00000010536
RRM
168
237
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSTSYP00000010536
RRM
604
625
IFVRNLPFDFTWKMLKDKFNEC
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s5549g4t1
Acyrtosiphon pisum
DGIL_AUG5s5549g4t1
N
0.000
AAEL010841
Aedes aegypti
AAEL010841
N
0.000
AGAP006460
Anopheles gambiae
AGAP006460
N
0.000
amel4_ncbi_hmm25495
Apis mellifera
amel4_ncbi_hmm25495
N
0.000
fgenesh2_pg.scaffold_154000069
Branchiostoma floridae
fgenesh2_pg.scaffold_154000069
N
0.000
ENSCING00000015692
Ciona intestinalis
ENSCING00000015692
N
0.000
ENSCING00000008328
Ciona intestinalis
ENSCING00000008328
N
0.000
e_gw1.29.70.1
Daphnia pulex
e_gw1.29.70.1
N
0.000
GF10124
Drosophila ananassae
FBgn0087165
N
0.000
GG15116
Drosophila erecta
FBgn0107369
N
0.000
GH15776
Drosophila grimshawi
FBgn0123247
N
0.000
CG11505
Drosophila melanogaster
FBgn0035424
N
0.000
GI12555
Drosophila mojavensis
FBgn0135312
N
0.000
GA11040-RA
Drosophila pseudoobscura
FBgn0071096
N
0.000
GM14551
Drosophila sechellia
FBgn0169472
N
0.000
GJ15458
Drosophila virilis
FBgn0202651
N
0.000
GK17513
Drosophila willistoni
FBgn0219512
N
0.000
GE21342
Drosophila yakuba
FBgn0238604
N
0.000
nasonia_NCBI_hmm376894
Nasonia vitripennis
nasonia_NCBI_hmm376894
N
0.000
PHUM582400
Pediculus humanus
PHUM582400
N
0.000
XP_001178699.1
Strongylocentrotus purpuratus
XP_001178699.1
N
0.000
XP_001184765.1
Strongylocentrotus purpuratus
XP_001184765.1
N
0.000
XP_001200300.1
Strongylocentrotus purpuratus
XP_001200300.1
N
0.000