GA25725-RB (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0247102 T44395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M003_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		0.971
aret
M110_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		0.971
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0291898 RRM 365 434
FBpp0291898 RRM 452 518
FBpp0291898 RRM 735 805
FBpp0291899 RRM 142 211
FBpp0291899 RRM 229 296
FBpp0291899 RRM 512 582

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_07115 Arthroderma benhamiae ARB_07115 N 0.000
ACLA_010070 Aspergillus clavatus CADACLAG00001255 N 0.000
AFUA_5G06760 Aspergillus fumigatus CADAFUAG00006062 N 0.000
ANIA_02245 Aspergillus nidulans CADANIAG00008932 N 0.000
BDBG_03718 Blastomyces dermatitidis BDBG_03718 N 0.000
BC1G_06564 Botrytis cinerea BC1G_06564 N 0.000
CHGG_07724 Chaetomium globosum CHGG_07724 N 0.000
CIMG_05989 Coccidioides immitis CIMG_05989 N 0.000
CPSG_06979 Coccidioides posadasii CPSG_06979 N 0.000
GLRG_03078 Colletotrichum graminicola GLRG_03078 N 0.000
estExt_Genewise1Plus.C_130268 Cryphonectria parasitica estExt_Genewise1Plus.C_130268 N 0.000
Poldip3 Dipodomys ordii ENSDORG00000006590 N 0.000
POLDIP3 Echinops telfairi ENSETEG00000018022 N 0.000
FOXG_07884 Fusarium oxysporum FOXG_07884 N 0.000
FVEG_04805 Fusarium verticillioides FVEG_04805 N 0.000
MGG_08641 Magnaporthe oryzae MGG_08641 N 0.000
MCYG_06871 Microsporum canis MCYG_06871 N 0.000
MGYG_03738 Microsporum gypseum MGYG_03738 N 0.000
e_gw1.3.641.1 Myceliophthora thermophila e_gw1.3.641.1 N 0.000
e_gw1.21.438.1 Mycosphaerella fijiensis e_gw1.21.438.1 N 0.000
estExt_Genewise1.C_chr_81258 Mycosphaerella graminicola estExt_Genewise1.C_chr_81258 N 0.000
e_gw1.6.1129.1 Nectria haematococca e_gw1.6.1129.1 N 0.000
NFIA_036360 Neosartorya fischeri CADNFIAG00003276 N 0.000
NCU01184 Neurospora crassa NCU01184 N 0.000
estExt_fgenesh3_pm.C_10433 Neurospora discreta estExt_fgenesh3_pm.C_10433 N 0.000
estExt_Genewise1Plus.C_240300 Neurospora tetrasperma estExt_Genewise1Plus.C_240300 N 0.000
PABG_06740 Paracoccidioides brasiliensis PABG_06740 N 0.000
PMAA_084580 Penicillium marneffei PMAA_084580 N 0.000
Pa_2_10560 Podospora anserina Pa_2_10560 N 0.000
SPOG_04952 Schizosaccharomyces cryophilus SPOG_04952 N 0.000
SJAG_04898 Schizosaccharomyces japonicus SJAG_04898 N 0.000
SOCG_02324 Schizosaccharomyces octosporus SOCG_02324 N 0.000
cwf2 Schizosaccharomyces pombe SPAC3A12.11c N 0.000
SS1G_00605 Sclerotinia sclerotiorum SS1G_00605 N 0.000
POLDIP3 Takifugu rubripes ENSTRUG00000006604 N 0.000
POLDIP3 Tarsius syrichta ENSTSYG00000007189 N 0.000
estExt_fgenesh2_pm.C_20569 Thielavia terrestris estExt_fgenesh2_pm.C_20569 N 0.000
TEQG_02969 Trichophyton equinum TEQG_02969 N 0.000
TERG_04085 Trichophyton rubrum TERG_04085 N 0.000
TRV_04903 Trichophyton verrucosum TRV_04903 N 0.000
UREG_04374 Uncinocarpus reesii UREG_04374 N 0.000
VDBG_00182 Verticillium albo atrum VDBG_00182 N 0.000
VDAG_08466 Verticillium dahliae VDAG_08466 N 0.000
poldip3 Xenopus tropicalis ENSXETG00000013412 N 0.000