XM_002893696.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__3419__AT1G32790.2 T44488_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3419__AT1G32790.2 RRM 182 249
fgenesh2_kg.1__3419__AT1G32790.2 RRM 279 347

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.000
AB07703.1 Alternaria brassicicola AB07703.1 N 0.000
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.000
fgenesh1_pg.00710_#_148 Aspergillus carbonarius fgenesh1_pg.00710_#_148 N 0.000
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.000
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.000
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.000
An14g05330 Aspergillus niger CADANGAG00011470 N 0.000
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.000
BDBG_01641 Blastomyces dermatitidis BDBG_01641 N 0.000
BC1G_06447 Botrytis cinerea BC1G_06447 N 0.000
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.000
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.000
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.000
CTRG_02162 Candida tropicalis CTRG_02162 N 0.000
CHGG_07887 Chaetomium globosum CHGG_07887 N 0.000
CPSG_09723 Coccidioides posadasii CPSG_09723 N 0.000
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.000
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.000
estExt_Genewise1.C_22051 Cryphonectria parasitica estExt_Genewise1.C_22051 N 0.000
CNBG_3113 Cryptococcus neoformans CNBG_3113 N 0.000
zc3h15 Danio rerio ENSDARG00000015889 N 0.000
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.000
GD10149 Drosophila simulans FBgn0181924 N 0.000
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.000
72073 Helobdella robusta 72073 N 0.000
HCAG_08348 Histoplasma capsulatum HCAG_08348 N 0.000
KLTH0G08162g Kluyveromyces thermotolerans KLTH0G08162g N 0.000
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.000
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.000
Minc08580 Meloidogyne incognita Minc08580 N 0.000
MCYG_02954 Microsporum canis MCYG_02954 N 0.000
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.000
estExt_Genewise1.C_30385 Mucor circinelloides estExt_Genewise1.C_30385 N 0.000
estExt_fgenesh1_pg.C_70448 Myceliophthora thermophila estExt_fgenesh1_pg.C_70448 N 0.000
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.000
estExt_fgenesh1_pm.C_chr_90145 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_90145 N 0.000
estExt_Genewise1Plus.C_sca_12_chr5_2_00446 Nectria haematococca estExt_Genewise1Plus.C_sca_12_chr5_2_00446 N 0.000
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.000
NCU01795 Neurospora crassa NCU01795 N 0.000
estExt_Genewise1.C_110154 Neurospora discreta estExt_Genewise1.C_110154 N 0.000
estExt_fgenesh1_pm.C_130118 Neurospora tetrasperma estExt_fgenesh1_pm.C_130118 N 0.000
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.000
PABG_07629 Paracoccidioides brasiliensis PABG_07629 N 0.000
Pc21g03130 Penicillium chrysogenum Pc21g03130 N 0.000
PMAA_036360 Penicillium marneffei PMAA_036360 N 0.000
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.000
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.000
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.000
PGTG_08922 Puccinia graminis PGTG_08922 N 0.000
PTTG_08784 Puccinia triticina PTTG_08784 N 0.000
SS1G_13466 Sclerotinia sclerotiorum SS1G_13466 N 0.000
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.000
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.000
estExt_fgenesh2_kg.C_60126 Thielavia terrestris estExt_fgenesh2_kg.C_60126 N 0.000
estExt_fgenesh1_pg.C_40101 Trichoderma atroviride estExt_fgenesh1_pg.C_40101 N 0.000
estExt_Genewise1.C_210247 Trichoderma reesei estExt_Genewise1.C_210247 N 0.000
gw1.23.236.1 Trichoderma virens gw1.23.236.1 N 0.000
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.000
TERG_01412 Trichophyton rubrum TERG_01412 N 0.000
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.000
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.000
UREG_04706 Uncinocarpus reesii UREG_04706 N 0.000
VDBG_05241 Verticillium albo atrum VDBG_05241 N 0.000
VDAG_08863 Verticillium dahliae VDAG_08863 N 0.000