LOC_Os02g48790 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g48790 T44970_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g48790.1 RRM 199 264
LOC_Os02g48790.1 RRM 284 349
LOC_Os02g48790.1 RRM 687 759
LOC_Os02g48790.2 RRM 199 264
LOC_Os02g48790.2 RRM 284 349
LOC_Os02g48790.2 RRM 687 759
LOC_Os02g48790.3 RRM 179 244
LOC_Os02g48790.3 RRM 264 329
LOC_Os02g48790.3 RRM 667 739
LOC_Os02g48790.4 RRM 179 244
LOC_Os02g48790.4 RRM 264 329
LOC_Os02g48790.4 RRM 667 739
LOC_Os02g48790.5 RRM 199 264
LOC_Os02g48790.5 RRM 284 349
LOC_Os02g48790.5 RRM 687 759

Links

Other RRM family RBPs
Other Oryza sativa RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.707
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.800
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.800
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.707
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.795
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.834
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.961
PK15886.1 Cannabis sativa PK15886.1 N 0.800
PK25465.1 Cannabis sativa PK25465.1 N 0.868
PK24656.1 Cannabis sativa PK24656.1 N 0.849
PK19379.1 Cannabis sativa PK19379.1 N 0.761
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.824
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.844
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.859
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.863
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.761
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.863
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.854
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.868
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.859
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.883
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.883
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.883
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.815
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.751
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.751
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.717
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.883
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.878
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.883
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.717
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.863
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.717
mgf005765m Mimulus guttatus mgf005765m N 0.839
mgf014747m Mimulus guttatus mgf014747m N 0.859
mgf015667m Mimulus guttatus mgf015667m N 0.810
mgf023970m Mimulus guttatus mgf023970m N 0.789
mgf000415m Mimulus guttatus mgf000415m N 0.810
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.771
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.805
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 1.000
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.805
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.771
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.863
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.859
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.863
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.863
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.820
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.780
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.863
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.761
ppa001307m Prunus persica ppa001307m N 0.868
ppa000997m Prunus persica ppa000997m N 0.785
ppa000845m Prunus persica ppa000845m N 0.820
ppa001327m Prunus persica ppa001327m N 0.868
28350.m000106 Ricinus communis 28350.m000106 N 0.859
30147.m014409 Ricinus communis 30147.m014409 N 0.820
29693.m002077 Ricinus communis 29693.m002077 N 0.854
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.839
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.849
SB04G021130 Sorghum bicolor Sb04g021130 N 0.790
SB10G000350 Sorghum bicolor Sb10g000350 N 0.966
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.839
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.859
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.878
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.951
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.951
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.771