B9N4W3_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0004s15080 T45499_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s15080.1 RRM 105 174
POPTR_0004s15080.1 RRM 197 268
POPTR_0004s15080.1 RRM 316 380

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100053345 Equus caballus ENSECAG00000017286 N 0.000
SFPQ Felis catus ENSFCAG00000012305 N 0.000
PSPC1 Meleagris gallopavo ENSMGAG00000015134 N 0.000
PSPC1 Microcebus murinus ENSMICG00000013970 N 0.000
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.000
PSPC1 Ornithorhynchus anatinus ENSOANG00000009017 N 0.000
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.000
PSPC1 Otolemur garnettii ENSOGAG00000012643 N 0.000
SFPQ Sorex araneus ENSSARG00000006409 N 0.000
PSPC1 Tupaia belangeri ENSTBEG00000002361 N 0.000