B9N4W3_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0004s15080 T45499_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s15080.1 RRM 105 174
POPTR_0004s15080.1 RRM 197 268
POPTR_0004s15080.1 RRM 316 380

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.937
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.865
29801.m003218 Ricinus communis 29801.m003218 I 0.860
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.836
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.831
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.826
ppa005661m Prunus persica ppa005661m I 0.821
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.816
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.812
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.812
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.812
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.812
PK15272.1 Cannabis sativa PK15272.1 I 0.807
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.802
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.797
PK00840.1 Cannabis sativa PK00840.1 I 0.793
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.792
MDP0000200455 Malus x domestica MDP0000200455 I 0.792
MDP0000136330 Malus x domestica MDP0000136330 I 0.792
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.787
ppa005903m Prunus persica ppa005903m I 0.787
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.787
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.784
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.783
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.778
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.778
30170.m014217 Ricinus communis 30170.m014217 I 0.773
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.773
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.768
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.763
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.758
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.758
mgf011075m Mimulus guttatus mgf011075m I 0.758
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.758
mgf000380m Mimulus guttatus mgf000380m I 0.758
MDP0000176892 Malus x domestica MDP0000176892 N 0.749
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.749
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.749
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.749
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.749
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.744
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.744
mgf012795m Mimulus guttatus mgf012795m I 0.744
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.739
mgf013285m Mimulus guttatus mgf013285m N 0.734
cassava1154.valid.m1 Manihot esculenta cassava1154.valid.m1 N 0.720
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.719
MDP0000262005 Malus x domestica MDP0000262005 N 0.715
MDP0000142206 Malus x domestica MDP0000142206 N 0.715
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.710
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.705
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.705
MDP0000614064 Malus x domestica MDP0000614064 N 0.702