estExt_gwp_gw1.C_780034 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp_gw1.C_780034 T51621_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_780034 RRM 36 101
estExt_gwp_gw1.C_780034 RRM 121 186
estExt_gwp_gw1.C_780034 RRM 451 522

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.740
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.848
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.843
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.725
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.735
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.833
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.804
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.858
PK15886.1 Cannabis sativa PK15886.1 N 0.858
PK19379.1 Cannabis sativa PK19379.1 N 0.784
PK25465.1 Cannabis sativa PK25465.1 N 0.926
PK24656.1 Cannabis sativa PK24656.1 N 0.902
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.917
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.873
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.868
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.765
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.912
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.882
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.902
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.917
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.877
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.907
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.907
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.838
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.794
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.794
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.907
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.907
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.770
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.912
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.907
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.770
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.892
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.735
mgf000415m Mimulus guttatus mgf000415m N 0.868
mgf014747m Mimulus guttatus mgf014747m N 0.878
mgf015667m Mimulus guttatus mgf015667m N 0.868
mgf023970m Mimulus guttatus mgf023970m N 0.830
mgf005765m Mimulus guttatus mgf005765m N 0.883
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.799
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.789
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.863
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.789
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.799
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.863
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.966
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 1.000
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.844
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.912
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.814
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.912
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.824
ppa001327m Prunus persica ppa001327m N 0.922
ppa000845m Prunus persica ppa000845m N 0.868
ppa000997m Prunus persica ppa000997m N 0.828
ppa001307m Prunus persica ppa001307m N 0.887
30147.m014409 Ricinus communis 30147.m014409 N 0.877
28350.m000106 Ricinus communis 28350.m000106 N 0.917
29693.m002077 Ricinus communis 29693.m002077 N 0.892
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.912
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.907
SB06G014670 Sorghum bicolor Sb06g014670 N 0.706
SB10G000350 Sorghum bicolor Sb10g000350 N 0.868
SB04G021130 Sorghum bicolor Sb04g021130 N 0.805
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.892
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.912
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.926
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.725
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.785
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.863
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.868