CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma12g33400.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma12g33400.1
T52815_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma12g33400.1
RRM
36
106
VYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIR
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s17730g6t1
Acyrtosiphon pisum
DGIL_AUG5s17730g6t1
I
0.000
AGAP004592
Anopheles gambiae
AGAP004592
I
0.000
amel4_ncbi_hmm6583
Apis mellifera
amel4_ncbi_hmm6583
I
0.000
BGIBMGA010178
Bombyx mori
BGIBMGA010178
I
0.000
estExt_Genewise1Plus.C_1640045
Capitella teleta
estExt_Genewise1Plus.C_1640045
I
0.000
estExt_fgenesh1_pg.C_3000025
Capitella teleta
estExt_fgenesh1_pg.C_3000025
I
0.000
CpipJ_CPIJ008634
Culex pipiens
CpipJ_CPIJ008634
I
0.000
CPIJ008634
Culex quinquefasciatus
CPIJ008634
I
0.000
estExt_Genewise1Plus.C_150169
Daphnia pulex
estExt_Genewise1Plus.C_150169
I
0.000
GF17608
Drosophila ananassae
FBgn0094626
I
0.000
GH18528
Drosophila grimshawi
FBgn0125995
I
0.000
B52
Drosophila melanogaster
FBgn0004587
D
0.000
GI22065
Drosophila mojavensis
FBgn0144794
I
0.000
GL23543
Drosophila persimilis
FBgn0161133
I
0.000
GA10599-RA
Drosophila pseudoobscura
FBgn0070656
I
0.000
GJ24113
Drosophila virilis
FBgn0211197
I
0.000
GK13948
Drosophila willistoni
FBgn0215954
I
0.000
ISCW010321
Ixodes scapularis
ISCW010321
I
0.000
nasonia_NCBI_hmm370623
Nasonia vitripennis
nasonia_NCBI_hmm370623
I
0.000
nasonia_NCBI_hmm368623
Nasonia vitripennis
nasonia_NCBI_hmm368623
I
0.000
PHUM290500
Pediculus humanus
PHUM290500
I
0.000