ISCW010321 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW010321 T44848_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.806
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW010321-PA RRM 5 67
ISCW010321-PA RRM 105 170

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.822
ISCW002531 Ixodes scapularis ISCW002531 I 0.814
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.814
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.814
B52 Drosophila melanogaster FBgn0004587 D 0.806
GK13948 Drosophila willistoni FBgn0215954 I 0.806
GF17608 Drosophila ananassae FBgn0094626 I 0.806
AGAP004592 Anopheles gambiae AGAP004592 I 0.806
GI22065 Drosophila mojavensis FBgn0144794 I 0.798
GJ24113 Drosophila virilis FBgn0211197 I 0.798
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.798
GH18528 Drosophila grimshawi FBgn0125995 I 0.798
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.798
GL23543 Drosophila persimilis FBgn0161133 I 0.798
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.798
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.791
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.791
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.791
PHUM290500 Pediculus humanus PHUM290500 I 0.791
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.775
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.775
ISCW010322 Ixodes scapularis ISCW010322 I 0.775
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.767
SRSF4 Homo sapiens ENSG00000116350 I 0.767
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.767
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.767
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.767
Srsf4 Mus musculus ENSMUSG00000028911 I 0.767
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.767
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.767
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.767
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.767
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.767
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.767
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.767
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.767
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.767
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.767
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.767
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.767
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.767
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.767
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.767
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.760
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.760
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.752
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.752
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.752
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.752
AAH71160 Xenopus laevis AAH71160 I 0.752
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.744
AAH46668 Xenopus laevis AAH46668 I 0.744
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.744
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.744
ISCW014220 Ixodes scapularis ISCW014220 I 0.744
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.744
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.744
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.744
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.744
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.744
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.736
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.736
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.736
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.736
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.736
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.736
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.736
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.736
SRSF6 Homo sapiens ENSG00000124193 I 0.736
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.736
AAEL012621 Aedes aegypti AAEL012621 I 0.736
Srsf6 Mus musculus ENSMUSG00000016921 I 0.736
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.736
AAH44085 Xenopus laevis AAH44085 I 0.736
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.729
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.729
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.729
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.729
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.721
srsf6b Danio rerio ENSDARG00000016783 I 0.721
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.721
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.721
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
AAH44265 Xenopus laevis AAH44265 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.721
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.713
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.713
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.705
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.705
srsf5a Danio rerio ENSDARG00000029818 I 0.705
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.705
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.705
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.705
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.705