estExt_Genewise1Plus.C_1640045 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_1640045 T51396_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.822
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.822
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_1640045 RRM 5 67
estExt_Genewise1Plus.C_1640045 RRM 120 185

Links

Other RRM family RBPs
Other Capitella teleta RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.829
AGAP004592 Anopheles gambiae AGAP004592 I 0.829
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.829
GK13948 Drosophila willistoni FBgn0215954 I 0.822
GF17608 Drosophila ananassae FBgn0094626 I 0.822
B52 Drosophila melanogaster FBgn0004587 D 0.822
GI22065 Drosophila mojavensis FBgn0144794 I 0.814
GH18528 Drosophila grimshawi FBgn0125995 I 0.814
GL23543 Drosophila persimilis FBgn0161133 I 0.814
GJ24113 Drosophila virilis FBgn0211197 I 0.814
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.814
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.814
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.814
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.806
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.798
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.791
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.791
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.791
SRSF4 Homo sapiens ENSG00000116350 I 0.791
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.791
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.791
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.791
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.791
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.791
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.791
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.791
Srsf4 Mus musculus ENSMUSG00000028911 I 0.791
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.791
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.791
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.791
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.791
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.791
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.791
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.791
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.791
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.791
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.783
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.783
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.783
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.783
PHUM290500 Pediculus humanus PHUM290500 I 0.783
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.775
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.775
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.775
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.775
SRSF6 Homo sapiens ENSG00000124193 I 0.775
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.775
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.775
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.775
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.775
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.767
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.767
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.767
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.767
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.767
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.767
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.767
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.767
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.767
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.767
AAH44265 Xenopus laevis AAH44265 I 0.767
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.767
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.760
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.760
srsf6a Danio rerio ENSDARG00000013729 I 0.760
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.760
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.760
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.760
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.760
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.760
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.760
Srsf6 Mus musculus ENSMUSG00000016921 I 0.760
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.752
AAH46668 Xenopus laevis AAH46668 I 0.752
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.752
ISCW010321 Ixodes scapularis ISCW010321 I 0.744
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.744
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.736
srsf6b Danio rerio ENSDARG00000016783 I 0.736
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.729
62194 Helobdella robusta 62194 I 0.729
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.721
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.721
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.713
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.713
ISCW002531 Ixodes scapularis ISCW002531 I 0.713
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.705
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.705
AAEL012621 Aedes aegypti AAEL012621 I 0.705
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.705
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.705