CPIJ008634 (Culex quinquefasciatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CPIJ008634 T34266_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.969
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.969
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPIJ008634-PA RRM 6 68
CPIJ008634-PA RRM 120 185

Links

Other RRM family RBPs
Other Culex quinquefasciatus RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 1.000
AGAP004592 Anopheles gambiae AGAP004592 I 0.977
B52 Drosophila melanogaster FBgn0004587 D 0.969
GK13948 Drosophila willistoni FBgn0215954 I 0.969
GF17608 Drosophila ananassae FBgn0094626 I 0.969
GI22065 Drosophila mojavensis FBgn0144794 I 0.961
GL23543 Drosophila persimilis FBgn0161133 I 0.961
GJ24113 Drosophila virilis FBgn0211197 I 0.961
GH18528 Drosophila grimshawi FBgn0125995 I 0.961
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.961
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.907
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.899
AAEL012621 Aedes aegypti AAEL012621 I 0.860
PHUM290500 Pediculus humanus PHUM290500 I 0.860
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.845
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.829
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.829
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.829
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.829
ISCW010321 Ixodes scapularis ISCW010321 I 0.814
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.806
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.806
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.798
Srsf4 Mus musculus ENSMUSG00000028911 I 0.775
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.775
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.775
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.775
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.775
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.775
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.775
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.775
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.775
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.775
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.775
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.775
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.775
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.775
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.775
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.775
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.775
SRSF4 Homo sapiens ENSG00000116350 I 0.775
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.775
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.775
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.767
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.767
AAH46668 Xenopus laevis AAH46668 I 0.767
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.767
ISCW010322 Ixodes scapularis ISCW010322 I 0.767
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.760
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.760
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.760
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.760
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.760
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.760
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.760
SRSF6 Homo sapiens ENSG00000124193 I 0.760
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.760
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.760
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.760
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.760
Srsf6 Mus musculus ENSMUSG00000016921 I 0.760
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.752
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.752
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.752
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.752
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.752
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.752
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.752
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.752
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.752
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.752
srsf6b Danio rerio ENSDARG00000016783 I 0.744
AAH44265 Xenopus laevis AAH44265 I 0.744
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.744
srsf6a Danio rerio ENSDARG00000013729 I 0.744
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.744
ISCW002531 Ixodes scapularis ISCW002531 I 0.744
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.744
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.744
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.736
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.736
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.736
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.736
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.736
ISCW014220 Ixodes scapularis ISCW014220 I 0.736
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.729
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.729
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.729
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.721
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.721
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.721
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.721
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.721
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.721
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.721
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.721
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.721
fgenesh1_pm.scaffold_318000001 Nematostella vectensis fgenesh1_pm.scaffold_318000001 N 0.721
62194 Helobdella robusta 62194 I 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.721
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.721
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.721
Srsf5 Mus musculus ENSMUSG00000021134 I 0.721
SRSF5 Felis catus ENSFCAG00000008848 I 0.721
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.721
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.721
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.721
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.721
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.721
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.721
LOC100053264 Equus caballus ENSECAG00000026873 I 0.721
srsf5a Danio rerio ENSDARG00000029818 I 0.721
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.721
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.721
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.721
SRSF5 Homo sapiens ENSG00000100650 D 0.721
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.721
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.721
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.713
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.713
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.713
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.713
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.713
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.713
Smp_036270 Schistosoma mansoni Smp_036270 N 0.713
Sjc_0074360 Schistosoma japonicum Sjc_0074360 N 0.713
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.705
AAH71160 Xenopus laevis AAH71160 I 0.705