BGIBMGA010178 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA010178 T55028_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.899
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.899
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA010178 RRM 6 68
BGIBMGA010178 RRM 117 182

Links

Other RRM family RBPs
Other Bombyx mori RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GI22065 Drosophila mojavensis FBgn0144794 I 0.907
GH18528 Drosophila grimshawi FBgn0125995 I 0.907
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.907
GJ24113 Drosophila virilis FBgn0211197 I 0.907
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.907
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.907
GL23543 Drosophila persimilis FBgn0161133 I 0.907
GK13948 Drosophila willistoni FBgn0215954 I 0.899
B52 Drosophila melanogaster FBgn0004587 D 0.899
GF17608 Drosophila ananassae FBgn0094626 I 0.899
AGAP004592 Anopheles gambiae AGAP004592 I 0.891
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.845
PHUM290500 Pediculus humanus PHUM290500 I 0.829
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.814
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.798
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.798
ISCW010321 Ixodes scapularis ISCW010321 I 0.791
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.791
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.791
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.775
AAEL012621 Aedes aegypti AAEL012621 I 0.775
ISCW014220 Ixodes scapularis ISCW014220 I 0.767
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.767
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.767
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.760
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.752
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.736
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.736
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.736
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.736
Srsf4 Mus musculus ENSMUSG00000028911 I 0.736
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.736
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.736
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.736
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.736
ISCW010322 Ixodes scapularis ISCW010322 I 0.736
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.736
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.736
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.736
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.736
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.736
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.736
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.736
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.736
srsf5a Danio rerio ENSDARG00000029818 I 0.736
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.736
SRSF4 Homo sapiens ENSG00000116350 I 0.736
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.736
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.729
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.729
srsf6b Danio rerio ENSDARG00000016783 I 0.729
AAH46668 Xenopus laevis AAH46668 I 0.729
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.729
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.729
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.729
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.729
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.729
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.721
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.721
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.721
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.721
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.721
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.721
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.721
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
SRSF6 Homo sapiens ENSG00000124193 I 0.721
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.721
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.721
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.721
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.721
ISCW002531 Ixodes scapularis ISCW002531 I 0.721
62194 Helobdella robusta 62194 I 0.721
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.713
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.713
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.713
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.705
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.705
AAH71160 Xenopus laevis AAH71160 I 0.705
AAH44265 Xenopus laevis AAH44265 I 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.705
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.705
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.705
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705