estExt_fgenesh1_pg.C_3000025 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_3000025 T50559_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.798
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_3000025 RRM 5 67
estExt_fgenesh1_pg.C_3000025 RRM 122 187

Links

Other RRM family RBPs
Other Capitella teleta RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.798
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.798
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.798
AGAP004592 Anopheles gambiae AGAP004592 I 0.798
GF17608 Drosophila ananassae FBgn0094626 I 0.798
B52 Drosophila melanogaster FBgn0004587 D 0.798
GK13948 Drosophila willistoni FBgn0215954 I 0.798
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.798
GL23543 Drosophila persimilis FBgn0161133 I 0.791
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.791
GH18528 Drosophila grimshawi FBgn0125995 I 0.791
GJ24113 Drosophila virilis FBgn0211197 I 0.791
GI22065 Drosophila mojavensis FBgn0144794 I 0.791
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.783
ISCW010321 Ixodes scapularis ISCW010321 I 0.775
PHUM290500 Pediculus humanus PHUM290500 I 0.775
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.767
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.767
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.767
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.760
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
AAH46668 Xenopus laevis AAH46668 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.744
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.736
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.736
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.736
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.736
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.729
Srsf6 Mus musculus ENSMUSG00000016921 I 0.729
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.729
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.729
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.729
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.729
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.729
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.729
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.729
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.729
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.729
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.729
SRSF6 Homo sapiens ENSG00000124193 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.721
ISCW010322 Ixodes scapularis ISCW010322 I 0.721
ISCW002531 Ixodes scapularis ISCW002531 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.721
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.721
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.721
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.713
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.713
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.713
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.713
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.713
srsf6a Danio rerio ENSDARG00000013729 I 0.713
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.713
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.713
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.713
AAEL012621 Aedes aegypti AAEL012621 I 0.713
AAH44265 Xenopus laevis AAH44265 I 0.713
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.713
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.713
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.713
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.713
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.713
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.713
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.713
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.713
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.713
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.713
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.713
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.713
Srsf5 Mus musculus ENSMUSG00000021134 I 0.713
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.713
SRSF5 Homo sapiens ENSG00000100650 D 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.713
LOC100053264 Equus caballus ENSECAG00000026873 I 0.713
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.713
srsf6b Danio rerio ENSDARG00000016783 I 0.713
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.713
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.713
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.713
SRSF5 Felis catus ENSFCAG00000008848 I 0.713
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.705
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.705
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.705