CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R015170
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R015170
T55613_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R015170
RRM
332
402
IWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_20318
Agaricus bisporus
estExt_fgenesh2_kg.C_20318
N
0.000
CC1G_04203
Coprinopsis cinerea
CC1G_04203
N
0.000
CNBG_2621
Cryptococcus neoformans
CNBG_2621
N
0.000
estExt_fgenesh3_kg.C_20205
Heterobasidion annosum
estExt_fgenesh3_kg.C_20205
N
0.000
gww1.8.38.1
Laccaria bicolor
gww1.8.38.1
N
0.000
e_gw1.49.8.1
Melampsora laricis populina
e_gw1.49.8.1
N
0.000
estExt_fgeneshMC_kg.C_70074
Mucor circinelloides
estExt_fgeneshMC_kg.C_70074
N
0.000
estExt_fgeneshMC_pm.C_20555
Mucor circinelloides
estExt_fgeneshMC_pm.C_20555
N
0.000
e_gwh2.1.218.1
Phanerochaete chrysosporium
e_gwh2.1.218.1
N
0.000
estExt_genemark.C_11050
Pleurotus ostreatus
estExt_genemark.C_11050
N
0.000
estExt_Genewise1Plus.C_1210056
Postia placenta
estExt_Genewise1Plus.C_1210056
N
0.000
PTTG_05898
Puccinia triticina
PTTG_05898
N
0.000
RO3G_11747
Rhizopus oryzae
RO3G_11747
N
0.000
RO3G_08705
Rhizopus oryzae
RO3G_08705
N
0.000
estExt_Genewise1Plus.C_21802
Schizophyllum commune
estExt_Genewise1Plus.C_21802
N
0.000
estExt_fgenesh2_pg.C_60255
Schizophyllum commune
estExt_fgenesh2_pg.C_60255
N
0.000
SJAG_01222
Schizosaccharomyces japonicus
SJAG_01222
N
0.000
estExt_fgenesh1_pm.C_80030
Sporobolomyces roseus
estExt_fgenesh1_pm.C_80030
N
0.000
estExt_Genewise1.C_110099
Tremella mesenterica
estExt_Genewise1.C_110099
N
0.000
UM03494
Ustilago maydis
UM03494
N
0.000