ppa000845m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa000845m T58314_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa000845m RRM 265 330
ppa000845m RRM 350 415
ppa000845m RRM 812 883

Links

Other RRM family RBPs
Other Prunus persica RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.725
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.809
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.804
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.721
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.721
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.819
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.765
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.824
PK15886.1 Cannabis sativa PK15886.1 N 0.907
PK25465.1 Cannabis sativa PK25465.1 N 0.877
PK24656.1 Cannabis sativa PK24656.1 N 0.838
PK19379.1 Cannabis sativa PK19379.1 N 0.794
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.902
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.824
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.849
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.863
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.789
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.858
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.833
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.848
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.828
MDP0000157627 Malus x domestica MDP0000157627 N 0.765
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.853
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.853
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.868
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.814
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.814
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.740
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.853
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.853
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.858
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.853
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.740
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.833
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.760
mgf000415m Mimulus guttatus mgf000415m N 0.887
mgf014747m Mimulus guttatus mgf014747m N 0.829
mgf015667m Mimulus guttatus mgf015667m N 0.887
mgf023970m Mimulus guttatus mgf023970m N 0.775
mgf005765m Mimulus guttatus mgf005765m N 0.824
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.820
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.750
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.794
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.820
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.794
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.750
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.863
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.868
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.868
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.838
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.838
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.863
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.843
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.843
ppa001307m Prunus persica ppa001307m N 0.833
ppa000997m Prunus persica ppa000997m N 0.819
ppa001327m Prunus persica ppa001327m N 0.863
29693.m002077 Ricinus communis 29693.m002077 N 0.824
30147.m014409 Ricinus communis 30147.m014409 N 0.853
28350.m000106 Ricinus communis 28350.m000106 N 0.843
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.853
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.868
SB04G021130 Sorghum bicolor Sb04g021130 N 0.795
SB10G000350 Sorghum bicolor Sb10g000350 N 0.838
SB06G014670 Sorghum bicolor Sb06g014670 N 0.706
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.868
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.887
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.902
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.711
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.838
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.833
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.776