B9GPM3_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0002s00480 T00745_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s00480.1 CCCH ZF 13 39
POPTR_0002s00480.1 RRM 70 140
POPTR_0002s00480.1 CCCH ZF 149 174
POPTR_0002s00480.2 CCCH ZF 13 39
POPTR_0002s00480.2 RRM 70 140
POPTR_0002s00480.2 CCCH ZF 149 174
POPTR_0002s00480.3 CCCH ZF 13 39
POPTR_0002s00480.3 RRM 70 140
POPTR_0002s00480.3 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.881
30170.m013808 Ricinus communis 30170.m013808 N 0.879
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.871
MDP0000321343 Malus x domestica MDP0000321343 N 0.871
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.871
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.863
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.863
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.863
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.856
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.855
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.855
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.839
mgf001805m Mimulus guttatus mgf001805m N 0.839
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.831
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.831
SB09G028530 Sorghum bicolor Sb09g028530 N 0.831
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.831
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.831
SB03G030670 Sorghum bicolor Sb03g030670 N 0.823
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.815
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.815
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.815
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.815
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.815
29991.m000639 Ricinus communis 29991.m000639 N 0.808
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.806
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.806
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.806
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.806
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.798
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.790
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.790
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.790
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.782
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.774
ppa008459m Prunus persica ppa008459m N 0.750
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.750
MDP0000179037 Malus x domestica MDP0000179037 N 0.750
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.750
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.750
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.750
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.750
mgf010816m Mimulus guttatus mgf010816m N 0.750
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.742
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.742
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.742
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.742
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.742
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.742
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.742
ppa025949m Prunus persica ppa025949m N 0.742
MDP0000640144 Malus x domestica MDP0000640144 N 0.742
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.742
29092.m000448 Ricinus communis 29092.m000448 N 0.742
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.734
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.734
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.734
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.734
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.734
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.734
MDP0000284705 Malus x domestica MDP0000284705 N 0.734
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.734
mgf001260m Mimulus guttatus mgf001260m N 0.718
mgf003009m Mimulus guttatus mgf003009m N 0.718
mgf004170m Mimulus guttatus mgf004170m N 0.718
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.718