mgf004170m (Mimulus guttatus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		mgf004170m T00993_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf004170m CCCH ZF 13 39
mgf004170m RRM 82 140
mgf004170m CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Mimulus guttatus RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf001260m Mimulus guttatus mgf001260m N 1.000
mgf003009m Mimulus guttatus mgf003009m N 1.000
MDP0000179037 Malus x domestica MDP0000179037 N 0.911
ppa008459m Prunus persica ppa008459m N 0.911
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.911
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.911
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.902
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.893
29092.m000448 Ricinus communis 29092.m000448 N 0.893
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.893
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.893
ppa025949m Prunus persica ppa025949m N 0.893
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.893
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.893
MDP0000640144 Malus x domestica MDP0000640144 N 0.884
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.884
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.884
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.875
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.875
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.875
MDP0000284705 Malus x domestica MDP0000284705 N 0.866
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.857
mgf010816m Mimulus guttatus mgf010816m N 0.848
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.839
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.839
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.839
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.830
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.830
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.822
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.821
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.821
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.821
30170.m013808 Ricinus communis 30170.m013808 N 0.812
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.812
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.812
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.812
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.812
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.804
MDP0000321343 Malus x domestica MDP0000321343 N 0.804
SB03G030670 Sorghum bicolor Sb03g030670 N 0.804
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.804
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.795
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.795
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.795
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.795
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.795
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.790
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.786
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.786
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.786
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.786
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.786
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.786
mgf001805m Mimulus guttatus mgf001805m N 0.786
SB09G028530 Sorghum bicolor Sb09g028530 N 0.786
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.786
29991.m000639 Ricinus communis 29991.m000639 N 0.784
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.777
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.777
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.777
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.777
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.768
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.718
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.714
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.706
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.704