HUA1 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT3G12680-TAIR-G T01900_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G12680.1-P CCCH ZF 176 201
AT3G12680.1-P CCCH ZF 226 252
AT3G12680.1-P CCCH ZF 269 295
AT3G12680.1-P CCCH ZF 341 367
AT3G12680.1-P CCCH ZF 421 447
AT3G12680.1-P CCCH ZF 477 500

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884872.1 Arabidopsis lyrata fgenesh2_kg.3__1328__AT3G12680.1 N 0.962
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.887
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.887
B9HYE1_POPTR Populus trichocarpa POPTR_0010s18390 N 0.863
29593.m000174 Ricinus communis 29593.m000174 N 0.856
mgf016176m Mimulus guttatus mgf016176m N 0.818
mgf000365m Mimulus guttatus mgf000365m N 0.818
GSVIVG00036686001 Vitis vinifera GSVIVG00036686001 N 0.815
ppa004704m Prunus persica ppa004704m N 0.809
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.809
chr3.CM0106.60.nd Lotus japonicus chr3.CM0106.60.nd N 0.790
MDP0000147415 Malus x domestica MDP0000147415 N 0.789
PK22271.1 Cannabis sativa PK22271.1 N 0.778
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.708