ppa004704m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa004704m T06511_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa004704m CCCH ZF 132 158
ppa004704m CCCH ZF 184 210
ppa004704m CCCH ZF 231 257
ppa004704m CCCH ZF 307 333
ppa004704m CCCH ZF 387 413
ppa004704m CCCH ZF 442 468

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000147415 Malus x domestica MDP0000147415 N 0.889
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.864
GSVIVG00036686001 Vitis vinifera GSVIVG00036686001 N 0.864
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.858
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.858
chr3.CM0106.60.nd Lotus japonicus chr3.CM0106.60.nd N 0.852
29593.m000174 Ricinus communis 29593.m000174 N 0.846
B9HYE1_POPTR Populus trichocarpa POPTR_0010s18390 N 0.840
PK22271.1 Cannabis sativa PK22271.1 N 0.821
XM_002884872.1 Arabidopsis lyrata fgenesh2_kg.3__1328__AT3G12680.1 N 0.821
mgf016176m Mimulus guttatus mgf016176m N 0.815
mgf000365m Mimulus guttatus mgf000365m N 0.815
HUA1 Arabidopsis thaliana AT3G12680-TAIR-G N 0.809
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.704