mgf016176m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf016176m T05637_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf016176m CCCH ZF 116 142
mgf016176m CCCH ZF 167 193
mgf016176m CCCH ZF 213 239
mgf016176m CCCH ZF 284 310
mgf016176m CCCH ZF 362 388
mgf016176m CCCH ZF 423 445

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf000365m Mimulus guttatus mgf000365m N 1.000
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.838
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.838
29593.m000174 Ricinus communis 29593.m000174 N 0.825
XM_002884872.1 Arabidopsis lyrata fgenesh2_kg.3__1328__AT3G12680.1 N 0.818
HUA1 Arabidopsis thaliana AT3G12680-TAIR-G N 0.818
ppa004704m Prunus persica ppa004704m N 0.815
B9HYE1_POPTR Populus trichocarpa POPTR_0010s18390 N 0.812
MDP0000147415 Malus x domestica MDP0000147415 N 0.801
chr3.CM0106.60.nd Lotus japonicus chr3.CM0106.60.nd N 0.795
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.790
GSVIVG00036686001 Vitis vinifera GSVIVG00036686001 N 0.790
PK22271.1 Cannabis sativa PK22271.1 N 0.776
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.702