cassava41851.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava41851.m1 T04806_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava41851.m1 CCCH ZF 748 772

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK14581.1 Cannabis sativa PK14581.1 N 0.880
GSVIVG00018827001 Vitis vinifera GSVIVG00018827001 N 0.840
Glyma11g07890.1 Glycine max Glyma11g07890.1 N 0.760
28140.m000105 Ricinus communis 28140.m000105 N 0.760
chr2.CM0249.60.nd Lotus japonicus chr2.CM0249.60.nd N 0.760
AT2G16485 Arabidopsis thaliana AT2G16485-TAIR-G N 0.731
PK00327.1 Cannabis sativa PK00327.1 N 0.720
B9NDJ8_POPTR Populus trichocarpa POPTR_0007s13760 N 0.720
POPTR_0005s11920 Populus trichocarpa POPTR_0005s11920 N 0.720