chr2.CM0249.60.nd (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr2.CM0249.60.nd T05995_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0249.60.nd CCCH ZF 75 99

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28140.m000105 Ricinus communis 28140.m000105 N 0.960
Glyma11g07890.1 Glycine max Glyma11g07890.1 N 0.920
POPTR_0005s11920 Populus trichocarpa POPTR_0005s11920 N 0.920
B9NDJ8_POPTR Populus trichocarpa POPTR_0007s13760 N 0.920
cassava18744.valid.m1 Manihot esculenta cassava18744.valid.m1 N 0.885
GSVIVG00018827001 Vitis vinifera GSVIVG00018827001 N 0.880
Medtr5g021410 Medicago truncatula Medtr5g021410 N 0.880
PK14581.1 Cannabis sativa PK14581.1 N 0.840
PK00327.1 Cannabis sativa PK00327.1 N 0.840
cassava41851.m1 Manihot esculenta cassava41851.m1 N 0.760
AT3G51120 Arabidopsis thaliana AT3G51120-TAIR-G N 0.720
XM_002877743.1 Arabidopsis lyrata scaffold_502165.1 N 0.720