B9NDJ8_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0007s13760 T04039_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s13760.1 CCCH ZF 1581 1605
POPTR_0007s13760.2 CCCH ZF 1398 1422

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0005s11920 Populus trichocarpa POPTR_0005s11920 N 1.000
cassava18744.valid.m1 Manihot esculenta cassava18744.valid.m1 N 0.962
Glyma11g07890.1 Glycine max Glyma11g07890.1 N 0.960
28140.m000105 Ricinus communis 28140.m000105 N 0.920
chr2.CM0249.60.nd Lotus japonicus chr2.CM0249.60.nd N 0.920
Medtr5g021410 Medicago truncatula Medtr5g021410 N 0.880
GSVIVG00018827001 Vitis vinifera GSVIVG00018827001 N 0.840
PK00327.1 Cannabis sativa PK00327.1 N 0.840
XM_002877743.1 Arabidopsis lyrata scaffold_502165.1 N 0.800
PK14581.1 Cannabis sativa PK14581.1 N 0.800
AT3G51120 Arabidopsis thaliana AT3G51120-TAIR-G N 0.800
cassava41851.m1 Manihot esculenta cassava41851.m1 N 0.720