fgenesh1_pg.C_scaffold_30000016 (Phytophthora ramorum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.C_scaffold_30000016 T05223_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_30000016 CCCH ZF 38 64
fgenesh1_pg.C_scaffold_30000016 CCCH ZF 76 102

Links

Other CCCH ZF family RBPs
Other Phytophthora ramorum RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
s_442346 Phytophthora sojae s_442346 N 0.963
PITG_03115 Phytophthora infestans PITG_03115 N 0.963
estExt_fgenesh1_pg.C_110230 Phytophthora capsici estExt_fgenesh1_pg.C_110230 N 0.944
SPRG_14542 Saprolegnia parasitica SPRG_14542 N 0.833
SPRG_05482 Saprolegnia parasitica SPRG_05482 N 0.833
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.722
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.704