DDB_G0285973 (Dictyostelium discoideum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 DDB_G0285973 T02212_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DDB0218764 CCCH ZF 196 222
DDB0218764 CCCH ZF 234 260

Links

Other CCCH ZF family RBPs
Other Dictyostelium discoideum RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.907
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.852
0300010273 Ostreococcus tauri 0300010273 I 0.778
CMA121C Cyanidioschyzon merolae CMA121C N 0.778
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.759
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.759
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.759
EIN_295900 Entamoeba invadens EIN_295900 N 0.759
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.759
EHI_008770 Entamoeba histolytica EHI_008770 N 0.759
EDI_287240 Entamoeba dispar EDI_287240 N 0.759
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.759
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.741
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.741
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.741
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.741
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.741
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.741
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.741
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.741
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.741
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.741
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.741
ZFP36 Danio rerio ENSDARG00000044395 I 0.741
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.741
PITG_03115 Phytophthora infestans PITG_03115 N 0.741
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.741
ECU01_0830 Encephalitozoon cuniculi ECU01_0830 N 0.722
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.722
ZFP36 Homo sapiens ENSG00000128016 D 0.722
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.722
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.722
zfp36l1b Danio rerio ENSDARG00000021443 I 0.722
fgenesh1_pg.C_scaffold_30000016 Phytophthora ramorum fgenesh1_pg.C_scaffold_30000016 N 0.722
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.722
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.722
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.722
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.722
AAI08849 Xenopus laevis AAI08849 I 0.722
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.722
s_442346 Phytophthora sojae s_442346 N 0.722
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.722
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.722
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.722
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.722
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.722
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.722
estExt_fgenesh1_pg.C_110230 Phytophthora capsici estExt_fgenesh1_pg.C_110230 N 0.722
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.722
AAH82435 Xenopus laevis AAH82435 I 0.722
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.722
AAD24207 Xenopus laevis AAD24207 I 0.722
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.722
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.704
153596 Helobdella robusta 153596 N 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.704
Ein01_0730 Encephalitozoon intestinalis Ein01_0730 N 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.704
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.704
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.704
BAC54909 Xenopus laevis BAC54909 I 0.704
AAI00163 Xenopus laevis AAI00163 I 0.704
Q805B4 Xenopus laevis Q805B4 I 0.704
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.704
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704
AAH84221 Xenopus laevis AAH84221 I 0.704
AAH84197 Xenopus laevis AAH84197 I 0.704
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.704
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.704
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.704
AAD24208 Xenopus laevis AAD24208 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.704
AAD24209 Xenopus laevis AAD24209 I 0.704
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.704
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.704
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.704
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.704
ZFP36L1 Homo sapiens ENSG00000185650 I 0.704
ZFP36L2 Homo sapiens ENSG00000152518 I 0.704
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 0.704
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.704
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.704
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.704
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.704
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.704
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.704
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.704
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.704
zgc:114130 Danio rerio ENSDARG00000040725 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.704
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.704
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.704
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.704
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.704
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.704
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.704
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.704
zfp36l1a Danio rerio ENSDARG00000016154 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.704
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.704
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.704
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.704
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.704
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.704
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.704
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.704
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.704
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.704
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.704
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.704
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.704
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.704
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.704
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.704
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.704
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.704
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.704
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.704
Zfp36 Mus musculus ENSMUSG00000044786 I 0.704
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.704
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.704
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.704
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.704
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.704
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.704
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.704